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    FAM204A family with sequence similarity 204 member A [ Homo sapiens (human) ]

    Gene ID: 63877, updated on 10-Oct-2024

    Summary

    Official Symbol
    FAM204Aprovided by HGNC
    Official Full Name
    family with sequence similarity 204 member Aprovided by HGNC
    Primary source
    HGNC:HGNC:25794
    See related
    Ensembl:ENSG00000165669 AllianceGenome:HGNC:25794
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C10orf84; bA319I23.1
    Expression
    Ubiquitous expression in testis (RPKM 6.9), brain (RPKM 5.1) and 25 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See FAM204A in Genome Data Viewer
    Location:
    10q26.11
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (118297925..118342324, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (119192932..119237311, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (120057437..120101836, complement)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene RAB11 family interacting protein 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2863 Neighboring gene cancer susceptibility 2 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:119907111-119907355 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:119963650-119964234 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:119964235-119964819 Neighboring gene Sharpr-MPRA regulatory region 3281 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:119973305-119974504 Neighboring gene long intergenic non-protein coding RNA 2944 Neighboring gene NANOG hESC enhancer GRCh37_chr10:120025545-120026208 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:120044911-120045412 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:120045413-120045912 Neighboring gene VISTA enhancer hs672 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:120101641-120102140 Neighboring gene long intergenic non-protein coding RNA 867 Neighboring gene Sharpr-MPRA regulatory region 4791 Neighboring gene uncharacterized LOC105378507

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001134672.2NP_001128144.1  protein FAM204A

      See identical proteins and their annotated locations for NP_001128144.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR when compared to variant 1.
      Source sequence(s)
      AL365498, BC023577, BM837313, DA168924
      Consensus CDS
      CCDS7605.1
      UniProtKB/Swiss-Prot
      D3DRC6, Q5T373, Q9H5V5, Q9H8W3
      UniProtKB/TrEMBL
      Q6IA51
      Related
      ENSP00000358170.4, ENST00000369172.8
    2. NM_022063.3NP_071346.1  protein FAM204A

      See identical proteins and their annotated locations for NP_071346.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AL365498, BC023577, DA168924
      Consensus CDS
      CCDS7605.1
      UniProtKB/Swiss-Prot
      D3DRC6, Q5T373, Q9H5V5, Q9H8W3
      UniProtKB/TrEMBL
      Q6IA51
      Related
      ENSP00000358183.4, ENST00000369183.9

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      118297925..118342324 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005270024.2XP_005270081.1  protein FAM204A isoform X2

      See identical proteins and their annotated locations for XP_005270081.1

      UniProtKB/TrEMBL
      Q6IA51
    2. XM_047425619.1XP_047281575.1  protein FAM204A isoform X3

      UniProtKB/Swiss-Prot
      D3DRC6, Q5T373, Q9H5V5, Q9H8W3
    3. XM_047425618.1XP_047281574.1  protein FAM204A isoform X1

      UniProtKB/TrEMBL
      F2Z2Y3
      Related
      ENSP00000432701.1, ENST00000470476.5

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      119192932..119237311 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054366526.1XP_054222501.1  protein FAM204A isoform X2

    2. XM_054366527.1XP_054222502.1  protein FAM204A isoform X3

      UniProtKB/Swiss-Prot
      D3DRC6, Q5T373, Q9H5V5, Q9H8W3
    3. XM_054366525.1XP_054222500.1  protein FAM204A isoform X1

      UniProtKB/TrEMBL
      F2Z2Y3