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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_009646.1 RefSeqGene
- Range
-
5013..35750
- Download
- GenBank, FASTA, Sequence Viewer (Graphics), LRG_562
mRNA and Protein(s)
-
NM_000195.5 → NP_000186.2 BLOC-3 complex member HPS1 isoform a
See identical proteins and their annotated locations for NP_000186.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (a). Variants 1, 6, and 7 all encode the same isoform (a).
- Source sequence(s)
-
AL139243, AL833734, BF447504, DA385131, U65676
- Consensus CDS
-
CCDS7475.1
- UniProtKB/Swiss-Prot
- A8MRT2, O15402, O15502, Q5TAA3, Q8WXE5, Q92902
- UniProtKB/TrEMBL
-
A0A8V8TN99
- Related
- ENSP00000355310.4, ENST00000361490.9
-
NM_001311345.2 → NP_001298274.1 BLOC-3 complex member HPS1 isoform e
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR, lacks a portion of the 5' coding region and initaites translation at a downstream start codon, compared to variant 1. It encodes isoform e, which is shorter at the N-terminus, compared to isoform a. Variants 5, 16, and 17 all encode the same isoform (e).
- Source sequence(s)
-
AL139243, BC002514, BF447504, DA385131
- UniProtKB/TrEMBL
-
Q658M9
-
NM_001322476.2 → NP_001309405.1 BLOC-3 complex member HPS1 isoform a
Status: REVIEWED
- Description
- Transcript Variant: This variant (6), along with variants 1 and 7, encodes isoform a.
- Source sequence(s)
-
AL139243
- Consensus CDS
-
CCDS7475.1
- UniProtKB/Swiss-Prot
- A8MRT2, O15402, O15502, Q5TAA3, Q8WXE5, Q92902
- UniProtKB/TrEMBL
-
A0A8V8TN99
- Related
- ENSP00000514159.1, ENST00000699142.1
-
NM_001322477.2 → NP_001309406.1 BLOC-3 complex member HPS1 isoform a
Status: REVIEWED
- Description
- Transcript Variant: This variant (7), along with variants 1 and 6, encodes isoform a.
- Source sequence(s)
-
AL139243
- Consensus CDS
-
CCDS7475.1
- UniProtKB/Swiss-Prot
- A8MRT2, O15402, O15502, Q5TAA3, Q8WXE5, Q92902
- UniProtKB/TrEMBL
-
A0A8V8TN99
- Related
- ENSP00000326649.6, ENST00000325103.10
-
NM_001322478.2 → NP_001309407.1 BLOC-3 complex member HPS1 isoform f
Status: REVIEWED
- Description
- Transcript Variant: This variant (8) and variant 9 both encode isoform f.
- Source sequence(s)
-
AL139243
- Consensus CDS
-
CCDS91316.1
- UniProtKB/TrEMBL
-
A0A8V8TN90
- Related
- ENSP00000514153.1, ENST00000699136.1
- Conserved Domains (3) summary
-
- pfam19036
Location:2 → 159
- Fuz_longin_1; First Longin domain of FUZ, MON1 and HPS1
- pfam19037
Location:204 → 372
- Fuz_longin_2; Second Longin domain of FUZ, MON1 and HPS1
- pfam19038
Location:507 → 662
- Fuz_longin_3; Third Longin domain of FUZ, MON1 and HPS1
-
NM_001322479.2 → NP_001309408.1 BLOC-3 complex member HPS1 isoform f
Status: REVIEWED
- Description
- Transcript Variant: This variant (9) and variant 8 both encode isoform f.
- Source sequence(s)
-
AL139243
- Consensus CDS
-
CCDS91316.1
- UniProtKB/TrEMBL
-
A0A8V8TN90
- Related
- ENSP00000514157.1, ENST00000699140.1
- Conserved Domains (3) summary
-
- pfam19036
Location:2 → 159
- Fuz_longin_1; First Longin domain of FUZ, MON1 and HPS1
- pfam19037
Location:204 → 372
- Fuz_longin_2; Second Longin domain of FUZ, MON1 and HPS1
- pfam19038
Location:507 → 662
- Fuz_longin_3; Third Longin domain of FUZ, MON1 and HPS1
-
NM_001322480.2 → NP_001309409.1 BLOC-3 complex member HPS1 isoform g
Status: REVIEWED
- Description
- Transcript Variant: This variant (10) and variant 11 both encode isoform g.
- Source sequence(s)
-
AL139243
- Consensus CDS
-
CCDS91314.1
- UniProtKB/TrEMBL
- A0A8V8TN94, A0A8V8TP59
- Related
- ENSP00000514146.1, ENST00000699125.1
- Conserved Domains (1) summary
-
- PRK12323
Location:86 → 263
- PRK12323; DNA polymerase III subunits gamma and tau; Provisional
-
NM_001322481.2 → NP_001309410.1 BLOC-3 complex member HPS1 isoform g
Status: REVIEWED
- Description
- Transcript Variant: This variant (11) and variant 10 both encode isoform g.
- Source sequence(s)
-
AL139243
- Consensus CDS
-
CCDS91314.1
- UniProtKB/TrEMBL
- A0A8V8TN94, A0A8V8TP59
- Related
- ENSP00000514156.1, ENST00000699139.1
-
NM_001322482.2 → NP_001309411.1 BLOC-3 complex member HPS1 isoform h
Status: REVIEWED
- Source sequence(s)
-
AL139243
- Consensus CDS
-
CCDS91313.1
- UniProtKB/TrEMBL
- A0A8V8TMQ9, A0A8V8TP59
- Related
- ENSP00000514137.1, ENST00000699112.1
-
NM_001322483.2 → NP_001309412.1 BLOC-3 complex member HPS1 isoform i
Status: REVIEWED
- Description
- Transcript Variant: This variant (13) and variant 14 both encode isoform i.
- Source sequence(s)
-
AL139243
-
NM_001322484.2 → NP_001309413.1 BLOC-3 complex member HPS1 isoform i
Status: REVIEWED
- Description
- Transcript Variant: This variant (14) and variant 13 both encode isoform i.
- Source sequence(s)
-
AL139243
-
NM_001322485.2 → NP_001309414.1 BLOC-3 complex member HPS1 isoform j
Status: REVIEWED
- Source sequence(s)
-
AL139243
-
NM_001322487.2 → NP_001309416.1 BLOC-3 complex member HPS1 isoform e
Status: REVIEWED
- Description
- Transcript Variant: This variant (17), along with variants 5 and 16, encodes isoform e.
- Source sequence(s)
-
AL139243
- UniProtKB/TrEMBL
-
Q658M9
- Conserved Domains (1) summary
-
- cl24019
Location:325 → 371
- CSN8_PSD8_EIF3K; CSN8/PSMD8/EIF3K family
-
NM_001322489.2 → NP_001309418.1 BLOC-3 complex member HPS1 isoform e
Status: REVIEWED
- Description
- Transcript Variant: This variant (17), along with variants 5 and 16, encodes isoform e.
- Source sequence(s)
-
AL139243
- UniProtKB/TrEMBL
-
Q658M9
- Conserved Domains (1) summary
-
- cl24019
Location:325 → 371
- CSN8_PSD8_EIF3K; CSN8/PSMD8/EIF3K family
-
NM_001322490.2 → NP_001309419.1 BLOC-3 complex member HPS1 isoform k
Status: REVIEWED
- Source sequence(s)
-
AL139243
- UniProtKB/TrEMBL
-
A0A0S2Z3Z8
-
NM_001322491.2 → NP_001309420.1 BLOC-3 complex member HPS1 isoform l
Status: REVIEWED
- Source sequence(s)
-
AL139243
- Consensus CDS
-
CCDS91315.1
- UniProtKB/TrEMBL
- A0A0S2Z3U1, B4DIX6, H0Y4K4
-
NM_001322492.2 → NP_001309421.1 BLOC-3 complex member HPS1 isoform m
Status: REVIEWED
- Source sequence(s)
-
AL139243
- UniProtKB/TrEMBL
-
A0A0S2Z3X2
-
NM_182639.4 → NP_872577.1 BLOC-3 complex member HPS1 isoform c
See identical proteins and their annotated locations for NP_872577.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR and contains an alternate 3' exon structure compared to variant 1. It encodes isoform c, which has a shorter and distinct C-terminus compared to isoform a.
- Source sequence(s)
-
BC000175, BI966698, DA385131, U96721
- Consensus CDS
-
CCDS7476.1
- UniProtKB/TrEMBL
- A0A0S2Z3U9, B4DIX6
- Related
- ENSP00000343638.5, ENST00000338546.9
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000010.11 Reference GRCh38.p14 Primary Assembly
- Range
-
98413948..98446935 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047425149.1 → XP_047281105.1 BLOC-3 complex member HPS1 isoform X2
- UniProtKB/TrEMBL
-
A0A8V8TN94
-
XM_047425147.1 → XP_047281103.1 BLOC-3 complex member HPS1 isoform X1
- UniProtKB/Swiss-Prot
- A8MRT2, O15402, O15502, Q5TAA3, Q8WXE5, Q92902
-
XM_047425148.1 → XP_047281104.1 BLOC-3 complex member HPS1 isoform X2
- UniProtKB/TrEMBL
-
A0A8V8TN94
-
XM_047425146.1 → XP_047281102.1 BLOC-3 complex member HPS1 isoform X1
- UniProtKB/Swiss-Prot
- A8MRT2, O15402, O15502, Q5TAA3, Q8WXE5, Q92902
-
XM_005269757.5 → XP_005269814.1 BLOC-3 complex member HPS1 isoform X1
See identical proteins and their annotated locations for XP_005269814.1
- UniProtKB/Swiss-Prot
- A8MRT2, O15402, O15502, Q5TAA3, Q8WXE5, Q92902
- UniProtKB/TrEMBL
-
A0A8V8TN99
-
XM_047425150.1 → XP_047281106.1 BLOC-3 complex member HPS1 isoform X3
-
XM_047425151.1 → XP_047281107.1 BLOC-3 complex member HPS1 isoform X4
- UniProtKB/TrEMBL
- A0A0S2Z3U1, H0Y4K4
- Related
- ENSP00000392462.2, ENST00000414009.2
-
XM_017016173.2 → XP_016871662.1 BLOC-3 complex member HPS1 isoform X5
- UniProtKB/TrEMBL
-
A0A0S2Z3X2
-
XM_047425152.1 → XP_047281108.1 BLOC-3 complex member HPS1 isoform X4
- UniProtKB/TrEMBL
- A0A0S2Z3U1, H0Y4K4
RNA
-
XR_007061961.1 RNA Sequence
-
XR_001747098.2 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060934.1 Alternate T2T-CHM13v2.0
- Range
-
99296171..99326913 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054365707.1 → XP_054221682.1 BLOC-3 complex member HPS1 isoform X2
- UniProtKB/TrEMBL
-
A0A8V8TN94
-
XM_054365705.1 → XP_054221680.1 BLOC-3 complex member HPS1 isoform X1
- UniProtKB/Swiss-Prot
- A8MRT2, O15402, O15502, Q5TAA3, Q8WXE5, Q92902
-
XM_054365706.1 → XP_054221681.1 BLOC-3 complex member HPS1 isoform X2
- UniProtKB/TrEMBL
-
A0A8V8TN94
-
XM_054365704.1 → XP_054221679.1 BLOC-3 complex member HPS1 isoform X1
- UniProtKB/Swiss-Prot
- A8MRT2, O15402, O15502, Q5TAA3, Q8WXE5, Q92902
-
XM_054365708.1 → XP_054221683.1 BLOC-3 complex member HPS1 isoform X3
-
XM_054365709.1 → XP_054221684.1 BLOC-3 complex member HPS1 isoform X4
- UniProtKB/TrEMBL
- A0A0S2Z3U1, H0Y4K4
-
XM_054365711.1 → XP_054221686.1 BLOC-3 complex member HPS1 isoform X5
-
XM_054365710.1 → XP_054221685.1 BLOC-3 complex member HPS1 isoform X4
- UniProtKB/TrEMBL
- A0A0S2Z3U1, H0Y4K4
RNA
-
XR_008488201.1 RNA Sequence
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_182637.1: Suppressed sequence
- Description
- NM_182637.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
-
NM_182638.1: Suppressed sequence
- Description
- NM_182638.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.