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    SEC61G-DT SEC61G divergent transcript [ Homo sapiens (human) ]

    Gene ID: 100996654, updated on 22-Oct-2024

    Summary

    Official Symbol
    SEC61G-DTprovided by HGNC
    Official Full Name
    SEC61G divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:40835
    See related
    Ensembl:ENSG00000234707 AllianceGenome:HGNC:40835
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in testis (RPKM 1.0), thyroid (RPKM 0.9) and 2 other tissues See more
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    Genomic context

    See SEC61G-DT in Genome Data Viewer
    Location:
    7p11.2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (54759313..54804969)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (54919239..54964895)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (54827006..54872662)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:54731509-54732224 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:54732225-54732940 Neighboring gene ribosomal protein L31 pseudogene 35 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr7:54742531-54743176 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr7:54743177-54743822 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:54748033-54748601 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18184 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:54827107-54828042 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18185 Neighboring gene SEC61 translocon subunit gamma Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:54847531-54848394 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:54848395-54849258 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:54849259-54850122 Neighboring gene negCOR silencer S2 Neighboring gene uncharacterized LOC124901636 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:54898510-54899709 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:54902010-54902201 Neighboring gene Rho GTPase activating protein 5 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110040.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AI825781, HY038517
      Related
      ENST00000439413.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      54759313..54804969
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      54919239..54964895
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)