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    Blcap BLCAP, apoptosis inducing factor [ Rattus norvegicus (Norway rat) ]

    Gene ID: 171113, updated on 10-Jul-2024

    Summary

    Official Symbol
    Blcapprovided by RGD
    Official Full Name
    BLCAP, apoptosis inducing factorprovided by RGD
    Primary source
    RGD:621666
    See related
    EnsemblRapid:ENSRNOG00000024437 AllianceGenome:RGD:621666
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be involved in apoptotic nuclear changes. Predicted to be integral component of membrane. Orthologous to human BLCAP (BLCAP apoptosis inducing factor). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    NEW
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    Genomic context

    See Blcap in Genome Data Viewer
    Location:
    3q42
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (166642676..166656924, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (146222699..146232859, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (154040165..154042096, complement)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134486197 Neighboring gene SRC proto-oncogene, non-receptor tyrosine kinase Neighboring gene uncharacterized LOC134486196 Neighboring gene neuronatin Neighboring gene uncharacterized LOC108350620 Neighboring gene uncharacterized LOC120101772

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Clone Names

    • MGC105330

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in apoptotic nuclear changes ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    apoptosis inducing factor BLCAP; bladder cancer-associated protein
    Names
    bc10
    bladder cancer 10 kDa protein
    bladder cancer associated protein homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_133582.3NP_598266.1  apoptosis inducing factor BLCAP

      See identical proteins and their annotated locations for NP_598266.1

      Status: VALIDATED

      Source sequence(s)
      AB071598, BC087661, BU671743
      UniProtKB/Swiss-Prot
      P62950
      UniProtKB/TrEMBL
      A6JWT5
      Related
      ENSRNOP00000031525.3, ENSRNOT00000033525.7
      Conserved Domains (1) summary
      pfam06726
      Location:165
      BC10; Bladder cancer-related protein BC10

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      166642676..166656924 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063283041.1XP_063139111.1  bladder cancer-associated protein isoform X1

      UniProtKB/Swiss-Prot
      P62950
      UniProtKB/TrEMBL
      A6JWT5