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    Vsig8 V-set and immunoglobulin domain containing 8 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 289236, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Vsig8provided by RGD
    Official Full Name
    V-set and immunoglobulin domain containing 8provided by RGD
    Primary source
    RGD:1562464
    See related
    EnsemblRapid:ENSRNOG00000008668 AllianceGenome:RGD:1562464
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1562464
    Summary
    Orthologous to human VSIG8 (V-set and immunoglobulin domain containing 8). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Lung (RPKM 9.3), Muscle (RPKM 4.8) and 3 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Vsig8 in Genome Data Viewer
    Location:
    13q24
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (87555533..87563720)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (85023177..85031364)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (90943255..90951443)

    Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134481593 Neighboring gene cilia and flagella associated protein 45 Neighboring gene uncharacterized LOC120096318 Neighboring gene SLAM family member 8 Neighboring gene Fc receptor-like 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Localization of hair shaft protein VSIG8 in the hair follicle, nail unit, and oral cavity. Rice RH, et al. J Invest Dermatol, 2011 Sep. PMID 21614015, Free PMC Article
    2. The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. Baltz AG, et al. Mol Cell, 2012 Jun 8. PMID 22681889
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    V-set and immunoglobulin domain-containing protein 8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001105972.1 → NP_001099442.1  V-set and immunoglobulin domain-containing protein 8 precursor

      See identical proteins and their annotated locations for NP_001099442.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473985
      UniProtKB/TrEMBL
      A6JG66, D4A7V8
      Related
      ENSRNOP00000011539.4, ENSRNOT00000011539.6
      Conserved Domains (3) summary
      smart00410
      Location:36 → 141
      IG_like; Immunoglobulin like
      pfam07686
      Location:28 → 141
      V-set; Immunoglobulin V-set domain
      cl11960
      Location:159 → 245
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086031.1 Reference GRCr8

      Range
      87555533..87563720
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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