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    Ammecr1l AMMECR1 like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 307526, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Ammecr1lprovided by RGD
    Official Full Name
    AMMECR1 likeprovided by RGD
    Primary source
    RGD:1307915
    See related
    EnsemblRapid:ENSRNOG00000016250 AllianceGenome:RGD:1307915
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1307915
    Summary
    Predicted to be active in nucleus. Orthologous to human AMMECR1L (AMMECR1 like). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Kidney (RPKM 85.3), Liver (RPKM 67.1) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ammecr1l in Genome Data Viewer
    Location:
    18p12
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 18 NC_086036.1 (23661649..23685391)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 18 NC_051353.1 (23386114..23411177)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 18 NC_005117.4 (24539530..24563576)

    Chromosome 18 - NC_086036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134482923 Neighboring gene solute carrier family 25, member 46 Neighboring gene Sin3A associated protein 130 Neighboring gene uncharacterized LOC100910201 Neighboring gene RNA polymerase II subunit D Neighboring gene WD repeat domain 33 Neighboring gene small nucleolar RNA SNORA21

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC188040

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    AMMECR1-like protein
    Names
    AMME chromosomal region gene 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107399.1 → NP_001100869.1  AMMECR1-like protein

      See identical proteins and their annotated locations for NP_001100869.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473974
      UniProtKB/TrEMBL
      A6J2N9
      Related
      ENSRNOP00000057790.4, ENSRNOT00000061074.4
      Conserved Domains (1) summary
      pfam01871
      Location:183 → 353
      AMMECR1; AMMECR1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086036.1 Reference GRCr8

      Range
      23661649..23685391
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006254591.5 → XP_006254653.1  AMMECR1-like protein isoform X2

      UniProtKB/TrEMBL
      A0A8I6GL02
      Related
      ENSRNOP00000095073.1, ENSRNOT00000094521.2
      Conserved Domains (1) summary
      pfam01871
      Location:183 → 348
      AMMECR1; AMMECR1

    2. XM_039096877.2 → XP_038952805.1  AMMECR1-like protein isoform X3

      Conserved Domains (1) summary
      pfam01871
      Location:184 → 348
      AMMECR1

    3. XM_039096878.2 → XP_038952806.1  AMMECR1-like protein isoform X3

      Conserved Domains (1) summary
      pfam01871
      Location:184 → 348
      AMMECR1

    4. XM_006254590.5 → XP_006254652.1  AMMECR1-like protein isoform X1

      UniProtKB/TrEMBL
      G3V9S2
      Conserved Domains (1) summary
      pfam01871
      Location:173 → 343
      AMMECR1; AMMECR1

    RNA

    1. XR_010059577.1 RNA Sequence

    2. XR_361285.5 RNA Sequence

    3. XR_005496041.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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