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    pan1 actin cortical patch component protein PanI [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 5802955, updated on 18-Sep-2024

    Summary

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    Official Symbol
    pan1
    Official Full Name
    actin cortical patch component protein PanI
    Primary source
    PomBase:SPAC25G10.09c
    Locus tag
    SPOM_SPAC25G10.09C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    SPAC27F1.01c
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    Genomic context

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    See pan1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    1
    Sequence:
    Chromosome: I; NC_003424.3 (4313118..4318707, complement)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene translation initiation factor eIF3b (p84) Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene tropomyosin Neighboring gene ubiquitin hydrolase Uch1 Neighboring gene protein Nuf2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Actin filament severing by cofilin dismantles actin patches and produces mother filaments for new patches. Chen Q, et al. Curr Biol, 2013 Jul 8. PMID 23727096, Free PMC Article
    2. Quantitative analysis of the mechanism of endocytic actin patch assembly and disassembly in fission yeast. Sirotkin V, et al. Mol Biol Cell, 2010 Aug 15. PMID 20587778, Free PMC Article
    3. Dephosphorylation of F-BAR protein Cdc15 modulates its conformation and stimulates its scaffolding activity at the cell division site. Roberts-Galbraith RH, et al. Mol Cell, 2010 Jul 9. PMID 20603077, Free PMC Article
    4. Large-scale screening of intracellular protein localization in living fission yeast cells by the use of a GFP-fusion genomic DNA library. Ding DQ, et al. Genes Cells, 2000 Mar. PMID 10759889
    5. Proximity-dependent biotinylation mediated by TurboID to identify protein-protein interaction networks in yeast. Larochelle M, et al. J Cell Sci, 2019 May 31. PMID 31064814

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables actin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables calcium ion binding ISM
    Inferred from Sequence Model
    more info
    		  
    Process Evidence Code Pubs
    involved_in actin cortical patch assembly ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in endocytosis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in endosomal transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in intracellular protein transport IC
    Inferred by Curator
    more info
    		  
    Component Evidence Code Pubs
    is_active_in actin cortical patch IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in cell cortex HDA PubMed 
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in nucleus HDA PubMed 
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    actin cortical patch component protein PanI

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      4313118..4318707 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001356163.2 → NP_001342822.1  actin cortical patch component protein PanI [Schizosaccharomyces pombe]

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q10172, Q9USC5
      Conserved Domains (6) summary
      smart00027
      Location:814 → 909
      EH; Eps15 homology domain
      pfam02205
      Location:1746 → 1772
      WH2; WH2 motif
      pfam08226
      Location:177 → 262
      DUF1720; Domain of unknown function (DUF1720)
      pfam09606
      Location:473 → 796
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cl25732
      Location:976 → 1150
      SMC_N; RecF/RecN/SMC N terminal domain
      cl26464
      Location:1180 → 1637
      Atrophin-1; Atrophin-1 family
    Nucleotide Protein
    Heading Accession and Version

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