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    AT4G26860 Putative pyridoxal phosphate-dependent enzyme, YBL036C type [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828793, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT4G26860
    Gene description
    Putative pyridoxal phosphate-dependent enzyme, YBL036C type
    Primary source
    Araport:AT4G26860
    Locus tag
    AT4G26860
    See related
    TAIR:AT4G26860
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F10M23.200; F10M23_200
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    Genomic context

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    See AT4G26860 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (13503053..13504876, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene small ubiquitin-like modifier 1 Neighboring gene GDP-L-galactose phosphorylase 1 Neighboring gene Class II aminoacyl-tRNA and biotin synthetases superfamily protein Neighboring gene Stigma-specific Stig1 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198
    3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001203921.1
    NM_118820.7

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    Putative pyridoxal phosphate-dependent enzyme, YBL036C type
    NP_001190850.1
    • Predicted pyridoxal phosphate-dependent enzyme, YBL036C type; FUNCTIONS IN: pyridoxal phosphate binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (InterPro:IPR011078), Alanine racemase, N-terminal (InterPro:IPR001608); BEST Arabidopsis thaliana protein match is: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (TAIR:AT1G11930.2).
    NP_567760.4
    • Predicted pyridoxal phosphate-dependent enzyme, YBL036C type; CONTAINS InterPro DOMAIN/s: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (InterPro:IPR011078), Alanine racemase, N-terminal (InterPro:IPR001608); BEST Arabidopsis thaliana protein match is: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (TAIR:AT1G11930.2); Has 7173 Blast hits to 7173 proteins in 2384 species: Archae - 21; Bacteria - 4279; Metazoa - 130; Fungi - 133; Plants - 56; Viruses - 0; Other Eukaryotes - 2554 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      13503053..13504876 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118820.7 → NP_567760.4  Putative pyridoxal phosphate-dependent enzyme, YBL036C type [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567760.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V151, A0A5S9XW63, A0A7G2F2Q2, Q94JS1
      Conserved Domains (1) summary
      cd06822
      Location:14 → 235
      PLPDE_III_YBL036c_euk; Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins

    2. NM_001203921.1 → NP_001190850.1  Putative pyridoxal phosphate-dependent enzyme, YBL036C type [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190850.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V151, A0A5S9XW63, F4JVS4
      Conserved Domains (1) summary
      cd06822
      Location:14 → 245
      PLPDE_III_YBL036c_euk; Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins
    Nucleotide Protein
    Heading Accession and Version

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