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    DRT100 Leucine-rich repeat (LRR) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820441, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DRT100
    Official Full Name
    Leucine-rich repeat (LRR) family protein
    Primary source
    TAIR:AT3G12610
    Locus tag
    AT3G12610
    See related
    Araport:AT3G12610
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DNA-DAMAGE REPAIR/TOLERATION 100
    Summary
    Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes.
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    Genomic context

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    See DRT100 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (4006346..4008018, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Oligosaccaryltransferase Neighboring gene uncharacterized protein Neighboring gene nudix hydrolase homolog 16 Neighboring gene Protein phosphatase 2C family protein Neighboring gene A20/AN1-like zinc finger family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A plant cDNA that partially complements Escherichia coli recA mutations predicts a polypeptide not strongly homologous to RecA proteins. Pang Q, et al. Proc Natl Acad Sci U S A, 1992 Sep 1. PMID 1518832, Free PMC Article
    2. A homolog of Escherichia coli RecA protein in plastids of higher plants. Cerutti H, et al. Proc Natl Acad Sci U S A, 1992 Sep 1. PMID 1518831, Free PMC Article
    3. The leucine-rich repeat as a protein recognition motif. Kobe B, et al. Curr Opin Struct Biol, 2001 Dec. PMID 11751054
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_112096.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables nucleotide binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within UV protection IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within response to UV IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within signal transduction IC
    Inferred by Curator
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Leucine-rich repeat (LRR) family protein
    NP_187867.1
    • DNA-DAMAGE REPAIR/TOLERATION 100 (DRT100); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT3G20820.1); Has 34126 Blast hits to 33731 proteins in 4830 species: Archae - 159; Bacteria - 16481; Metazoa - 3906; Fungi - 1752; Plants - 1258; Viruses - 310; Other Eukaryotes - 10260 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4006346..4008018 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112096.3 → NP_187867.1  Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187867.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q00874, Q9LHK0
      UniProtKB/TrEMBL
      A0A178VMS3, A0A5S9XBF6
      Conserved Domains (2) summary
      PLN00113
      Location:25 → 344
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:112 → 136
      LRR_RI; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q00874.2

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