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    AGP21 arabinogalactan protein 21 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841979, updated on 18-Sep-2024

    Summary

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    Official Symbol
    AGP21
    Official Full Name
    arabinogalactan protein 21
    Primary source
    TAIR:AT1G55330
    Locus tag
    AT1G55330
    See related
    Araport:AT1G55330
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    arabinogalactan protein 21; ARABINOGALACTAN PROTEIN 21; ATAGP21; F7A10.11; F7A10_11
    Summary
    Encodes a putative arabinogalactan-protein (AGP21).
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    Genomic context

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    See AGP21 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (20648465..20648891, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene acyl-activating enzyme 18 Neighboring gene RNA polymerase II transcription mediator Neighboring gene uncharacterized protein Neighboring gene hypothetical protein (DUF1639) Neighboring gene calpain-type cysteine protease family Neighboring gene tRNA-splicing ligase (DUF239)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. Borner GH, et al. Plant Physiol, 2003 Jun. PMID 12805588, Free PMC Article
    2. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. Borner GH, et al. Plant Physiol, 2002 Jun. PMID 12068095, Free PMC Article
    3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_104409.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    arabinogalactan protein 21
    NP_564686.1
    • arabinogalactan protein 21 (AGP21); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 12 (TAIR:AT3G13520.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20648465..20648891 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104409.3 → NP_564686.1  arabinogalactan protein 21 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564686.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C8A4
      UniProtKB/TrEMBL
      A0A178W6X6, A0A5S9WM24
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C8A4.1

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