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    appr-1-p processing enzyme family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843266, updated on 18-Sep-2024

    Summary

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    Official Full Name
    appr-1-p processing enzyme family protein
    Primary source
    TAIR:AT1G69340
    Locus tag
    AT1G69340
    See related
    Araport:AT1G69340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F10D13.28; F10D13_28
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    15
    Sequence:
    Chromosome: 1; NC_003070.9 (26065698..26069843)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene CLAVATA3/ESR-RELATED 10 Neighboring gene Remorin family protein Neighboring gene RING/U-box superfamily protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene T-box transcription factor, putative (DUF863)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001334408.1
    NM_105601.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion HDA PubMed 

    General protein information

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    Preferred Names
    appr-1-p processing enzyme family protein
    NP_564960.1
    • appr-1-p processing enzyme family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Appr-1-p processing (InterPro:IPR002589); BEST Arabidopsis thaliana protein match is: appr-1-p processing enzyme family protein (TAIR:AT2G40600.1); Has 3597 Blast hits to 3538 proteins in 1210 species: Archae - 64; Bacteria - 1971; Metazoa - 984; Fungi - 140; Plants - 224; Viruses - 8; Other Eukaryotes - 206 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      26065698..26069843
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105601.4 → NP_564960.1  appr-1-p processing enzyme family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564960.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WBP6, A0A384KYZ5, Q94JV1, Q9C796
      Conserved Domains (2) summary
      cd02905
      Location:85 → 253
      Macro_GDAP2-like; macrodomain, GDAP2-like family
      pfam13716
      Location:409 → 542
      CRAL_TRIO_2; Divergent CRAL/TRIO domain

    2. NM_001334408.1 → NP_001323191.1  appr-1-p processing enzyme family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WBP6, A0A384KYZ5, Q94JV1, Q9C796
      Conserved Domains (2) summary
      cd02905
      Location:85 → 253
      Macro_GDAP2-like; macrodomain, GDAP2-like family
      pfam13716
      Location:409 → 542
      CRAL_TRIO_2; Divergent CRAL/TRIO domain
    Nucleotide Protein
    Heading Accession and Version

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