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    Transmembrane Fragile-X-F-associated protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843732, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Transmembrane Fragile-X-F-associated protein
    Primary source
    TAIR:AT1G73950
    Locus tag
    AT1G73950
    See related
    Araport:AT1G73950
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2P9.18; F2P9_18
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    14
    Sequence:
    Chromosome: 1; NC_003070.9 (27799696..27804687, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene polarity axis stabilization protein Neighboring gene tumor necrosis factor receptor family protein Neighboring gene TBP-associated factor 2 Neighboring gene CLAVATA3/ESR-RELATED 13

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001334614.1
    NM_106054.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    Transmembrane Fragile-X-F-associated protein
    NP_177535.2
    • Transmembrane Fragile-X-F-associated protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane Fragile-X-F-associated protein (InterPro:IPR019396), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: Transmembrane Fragile-X-F-associated protein (TAIR:AT1G18470.1); Has 2761 Blast hits to 2652 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 1645; Fungi - 8; Plants - 510; Viruses - 253; Other Eukaryotes - 345 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      27799696..27804687 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106054.4 → NP_177535.2  Transmembrane Fragile-X-F-associated protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177535.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WU71, F4HS21
      Conserved Domains (2) summary
      pfam10269
      Location:28 → 291
      Tmemb_185A; Transmembrane Fragile-X-F protein
      pfam13920
      Location:415 → 460
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

    2. NM_001334614.1 → NP_001322804.1  Transmembrane Fragile-X-F-associated protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AV52, A0A5S9WU71
    Nucleotide Protein
    Heading Accession and Version

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