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    XTH8 xyloglucan endotransglucosylase/hydrolase 8 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837698, updated on 18-Sep-2024

    Summary

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    Official Symbol
    XTH8
    Official Full Name
    xyloglucan endotransglucosylase/hydrolase 8
    Primary source
    TAIR:AT1G11545
    Locus tag
    AT1G11545
    See related
    Araport:AT1G11545
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T23J18.21; T23J18_21; xyloglucan endotransglucosylase/hydrolase 8
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    Genomic context

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    See XTH8 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (3878495..3880391, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene C-terminal cysteine residue is changed to a serine 1 Neighboring gene Sulfite exporter TauE/SafE family protein Neighboring gene tRNA-Leu Neighboring gene Oligosaccharyltransferase complex/magnesium transporter family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_101028.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables polysaccharide binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables xyloglucan:xyloglucosyl transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cell wall biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in xyloglucan metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    xyloglucan endotransglucosylase/hydrolase 8
    NP_563892.1
    • xyloglucan endotransglucosylase/hydrolase 8 (XTH8); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16, active site (InterPro:IPR008263), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 7 (TAIR:AT4G37800.1); Has 2134 Blast hits to 2114 proteins in 302 species: Archae - 0; Bacteria - 267; Metazoa - 0; Fungi - 408; Plants - 1375; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3878495..3880391 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101028.4 → NP_563892.1  xyloglucan endotransglucosylase/hydrolase 8 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563892.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WR89, Q8L9A9, Q9LPY1
      UniProtKB/TrEMBL
      A0A178W0W2, A0A5S9TV01
      Conserved Domains (1) summary
      cd02176
      Location:33 → 299
      GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8L9A9.2

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