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    Fatty acid hydroxylase superfamily [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839541, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Fatty acid hydroxylase superfamily
    Primary source
    TAIR:AT1G02190
    Locus tag
    AT1G02190
    See related
    Araport:AT1G02190
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T6A9.15
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (415074..418027)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Cox19 family protein (CHCH motif) Neighboring gene metacaspase 1 Neighboring gene ferredoxin-like protein Neighboring gene Fatty acid hydroxylase superfamily Neighboring gene miscRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis CER1-LIKE1 Functions in a Cuticular Very-Long-Chain Alkane-Forming Complex. Pascal S, et al. Plant Physiol, 2019 Feb. PMID 30514726, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_100099.4
    NM_202013.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in lipid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Fatty acid hydroxylase superfamily
    NP_171721.3
    • Fatty acid hydroxylase superfamily; FUNCTIONS IN: oxidoreductase activity, iron ion binding, catalytic activity; INVOLVED IN: oxidation reduction, fatty acid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694), Uncharacterised protein, Wax2 C-terminal (InterPro:IPR021940); BEST Arabidopsis thaliana protein match is: Fatty acid hydroxylase superfamily (TAIR:AT2G37700.1); Has 2538 Blast hits to 2531 proteins in 532 species: Archae - 0; Bacteria - 866; Metazoa - 257; Fungi - 377; Plants - 504; Viruses - 3; Other Eukaryotes - 531 (source: NCBI BLink).
    NP_973742.1
    • Fatty acid hydroxylase superfamily; FUNCTIONS IN: oxidoreductase activity, iron ion binding, catalytic activity; INVOLVED IN: oxidation reduction, fatty acid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694), Uncharacterised protein, Wax2 C-terminal (InterPro:IPR021940); BEST Arabidopsis thaliana protein match is: Fatty acid hydroxylase superfamily (TAIR:AT2G37700.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      415074..418027
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100099.4 → NP_171721.3  Fatty acid hydroxylase superfamily [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_171721.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4HVX7, F4HVX8, O23678
      UniProtKB/TrEMBL
      A0A5S9S5Z5, Q39047
      Conserved Domains (1) summary
      PLN02869
      Location:1 → 622
      PLN02869; fatty aldehyde decarbonylase

    2. NM_202013.1 → NP_973742.1  Fatty acid hydroxylase superfamily [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973742.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W820, Q39047
      Conserved Domains (1) summary
      PLN02869
      Location:1 → 618
      PLN02869; fatty aldehyde decarbonylase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4HVX7.1

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