U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    PDE345 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 814643, updated on 22-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    PDE345
    Primary source
    Araport:AT2G01140
    Locus tag
    AT2G01140
    See related
    TAIR:AT2G01140
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtFBA3; FBA3; fructose-bisphosphate aldolase 3; PIGMENT DEFECTIVE 345
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PDE345 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (94727..96863, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Sec-independent periplasmic protein translocase Neighboring gene ncRNA Neighboring gene origin recognition complex subunit 4 Neighboring gene DEA(D/H)-box RNA helicase family protein Neighboring gene RING-H2 finger protein 2B Neighboring gene tRNA-Asn

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Differential expression of plastidic aldolase genes in Nicotiana plants under salt stress. Yamada S, et al. Plant Sci, 2000 May 15. PMID 10725559
    2. Regulation of plant cytosolic aldolase functions by redox-modifications. van der Linde K, et al. Plant Physiol Biochem, 2011 Sep. PMID 21782461
    3. The impact of oxidative stress on Arabidopsis mitochondria. Sweetlove LJ, et al. Plant J, 2002 Dec. PMID 12492832
    4. Tocopherol cyclase (VTE1) localization and vitamin E accumulation in chloroplast plastoglobule lipoprotein particles. Vidi PA, et al. J Biol Chem, 2006 Apr 21. PMID 16414959
    5. Heterogeneity of the mitochondrial proteome for photosynthetic and non-photosynthetic Arabidopsis metabolism. Lee CP, et al. Mol Cell Proteomics, 2008 Jul. PMID 18385124

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

    Go to the top of the page

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_126176.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables fructose-bisphosphate aldolase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in gluconeogenesis ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    involved_in glycolytic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in glycolytic process ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    acts_upstream_of_or_within pentose-phosphate shunt TAS
    Traceable Author Statement
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in chloroplast stroma HDA PubMed 
    located_in chloroplast thylakoid HDA PubMed 
    located_in mitochondrion HDA PubMed 
    located_in plastid HDA PubMed 
    located_in plastoglobule HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    Aldolase superfamily protein
    NP_178224.1
    • Aldolase superfamily protein; FUNCTIONS IN: fructose-bisphosphate aldolase activity; INVOLVED IN: response to oxidative stress, response to cadmium ion, pentose-phosphate shunt; LOCATED IN: mitochondrion, chloroplast, plastoglobule; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741); BEST Arabidopsis thaliana protein match is: fructose-bisphosphate aldolase 2 (TAIR:AT4G38970.1); Has 4797 Blast hits to 4792 proteins in 909 species: Archae - 0; Bacteria - 723; Metazoa - 1159; Fungi - 8; Plants - 476; Viruses - 0; Other Eukaryotes - 2431 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      94727..96863 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126176.5 → NP_178224.1  Aldolase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178224.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZU52
      UniProtKB/TrEMBL
      A0A178VVW3, A0A5S9WW91
      Conserved Domains (1) summary
      PLN02425
      Location:1 → 391
      PLN02425; probable fructose-bisphosphate aldolase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZU52.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools