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    LINC00841 long intergenic non-protein coding RNA 841 [ Homo sapiens (human) ]

    Gene ID: 283033, updated on 22-Oct-2024

    Summary

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    Official Symbol
    LINC00841provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 841provided by HGNC
    Primary source
    HGNC:HGNC:27430
    See related
    Ensembl:ENSG00000233395 AllianceGenome:HGNC:27430
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in testis (RPKM 1.7) and gall bladder (RPKM 0.1) See more
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    Genomic context

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    See LINC00841 in Genome Data Viewer
    Location:
    10q11.21
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (43909296..43981265)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (44790131..44862075)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (44404744..44476713)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44358448-44358948 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44358949-44359449 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_12564 Neighboring gene long intergenic non-protein coding RNA 619 Neighboring gene Sharpr-MPRA regulatory region 2960 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_12586 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:44372279-44372466 Neighboring gene long intergenic non-protein coding RNA 840 Neighboring gene long intergenic non-protein coding RNA 2659 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44475579-44476080 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44476081-44476580 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44501255-44501828 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3305 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3306 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44510639-44511138 Neighboring gene NANOG hESC enhancer GRCh37_chr10:44537391-44537911 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_12630 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_12643 Neighboring gene uncharacterized LOC124902543 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:44607592-44608157 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_12798 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_12804 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:44664362-44665561 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_12892 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44688953-44689454 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44689455-44689954 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_12920 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3307 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44703238-44703811 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:44728896-44729550 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:44729551-44730205 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr10:44730206-44730859 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_13072 Neighboring gene VISTA enhancer hs2509 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3311 Neighboring gene uncharacterized LOC124902544 Neighboring gene long intergenic non-protein coding RNA 2881

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Association of the rs1870634 Variant in Long Intergenic Non-protein Coding RNA 841 with Coronary Artery Disease: A GWAS-Replication Study in an Iranian Population. Tarighi S, et al. Biochem Genet, 2018 Oct. PMID 29654577
    2. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. Comuzzie AG, et al. PLoS One, 2012. PMID 23251661, Free PMC Article
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Results confirmed the association of rs1870634 in LINC00841 with coronary artery disease susceptibility in an Iranian population.
      Title: Association of the rs1870634 Variant in Long Intergenic Non-protein Coding RNA 841 with Coronary Artery Disease: A GWAS-Replication Study in an Iranian Population.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
    EBI GWAS Catalog

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Clone Names

    • FLJ17344

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033846.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK310302, AL512640, HY016364

    2. NR_136147.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL512640, HY016364, HY199525

    3. NR_136148.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AA432001, AI205837, HY019343
      Related
      ENST00000446107.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      43909296..43981265
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      44790131..44862075
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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