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    TSPYL5 TSPY like 5 [ Homo sapiens (human) ]

    Gene ID: 85453, updated on 28-Oct-2024

    Summary

    Official Symbol
    TSPYL5provided by HGNC
    Official Full Name
    TSPY like 5provided by HGNC
    Primary source
    HGNC:HGNC:29367
    See related
    Ensembl:ENSG00000180543 MIM:614721; AllianceGenome:HGNC:29367
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    Predicted to enable chromatin binding activity and histone binding activity. Involved in several processes, including cellular response to gamma radiation; positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction; and positive regulation of protein ubiquitination. Predicted to be part of chromatin. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Oct 2024]
    Orthologs
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    Genomic context

    See TSPYL5 in Genome Data Viewer
    Location:
    8q22.1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (97273488..97277928, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (98399254..98403693, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (98285716..98290156, complement)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene carboxypeptidase Q Neighboring gene uncharacterized LOC124901985 Neighboring gene uncharacterized LOC101927066 Neighboring gene uncharacterized LOC105375655 Neighboring gene Sharpr-MPRA regulatory region 10694 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:98217733-98218532 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:98218533-98219332 Neighboring gene Sharpr-MPRA regulatory region 2413 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:98226988-98227220 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:98244253-98244860 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:98289193-98289694 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:98331415-98331933 Neighboring gene Sharpr-MPRA regulatory region 7239 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:98346916-98347522 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:98347523-98348128 Neighboring gene small nucleolar RNA, C/D box 3H Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:98504615-98505171 Neighboring gene uncharacterized LOC105375657

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Phenotypes

    EBI GWAS Catalog

    Description
    TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.
    EBI GWAS Catalog

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • KIAA1750

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables chromatin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables histone binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in chromatin IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    testis-specific Y-encoded-like protein 5
    Names
    TSPY-like protein 5

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_033512.3NP_277047.2  testis-specific Y-encoded-like protein 5

      See identical proteins and their annotated locations for NP_277047.2

      Status: VALIDATED

      Source sequence(s)
      AB051537, AK091445, BC045630
      Consensus CDS
      CCDS34927.1
      UniProtKB/Swiss-Prot
      B3KRF0, Q86VY4, Q9C0B3
      Related
      ENSP00000322802.3, ENST00000322128.5
      Conserved Domains (1) summary
      cl08298
      Location:205382
      NAP; Nucleosome assembly protein (NAP)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      97273488..97277928 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      98399254..98403693 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)