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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001198808.1 → NP_001185737.1 scm-like with four MBT domains protein 2 isoform 2
See identical proteins and their annotated locations for NP_001185737.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) has multiple differences in the presence and absence of exons, compared to variant 1, which results in a shorter transcript encoding a longer protein (isoform 2), compared to isoform 1.
- Source sequence(s)
-
AK147557, AK147651, BC145610, BQ033024
- Consensus CDS
-
CCDS57152.1
- UniProtKB/Swiss-Prot
- Q5DTW2, Q80VG7
- UniProtKB/TrEMBL
-
Q3UH63
- Conserved Domains (3) summary
-
- cd09581
Location:893 → 975
- SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
- smart00561
Location:47 → 143
- MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
- pfam12140
Location:528 → 643
- SLED; SLED domain
-
NM_001198809.1 → NP_001185738.1 scm-like with four MBT domains protein 2 isoform 3
See identical proteins and their annotated locations for NP_001185738.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) lacks an exon in the 5' UTR and contains an extra segment at its 3' terminus, compared to variant 1, which results in a much shorter transcript encoding a much shorter protein (isoform 3) with a novel C-terminus, compared to isoform 1.
- Source sequence(s)
-
AK049505, BB636293, BC115511
- Consensus CDS
-
CCDS57153.1
- UniProtKB/TrEMBL
- Q3TH50, Q8BG70
- Related
- ENSMUSP00000110514.3, ENSMUST00000114864.9
- Conserved Domains (1) summary
-
- smart00561
Location:47 → 143
- MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
-
NM_001369078.1 → NP_001356007.1 scm-like with four MBT domains protein 2 isoform 1
Status: VALIDATED
- Source sequence(s)
-
AL772216, AL953853
- Consensus CDS
-
CCDS38046.1
- UniProtKB/Swiss-Prot
- Q5DTW2, Q80VG7
- UniProtKB/TrEMBL
-
Q3UH07
- Conserved Domains (3) summary
-
- cd09581
Location:860 → 942
- SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
- smart00561
Location:47 → 143
- MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
- pfam12140
Location:528 → 643
- SLED; SLED domain
-
NM_177386.5 → NP_796360.2 scm-like with four MBT domains protein 2 isoform 1
See identical proteins and their annotated locations for NP_796360.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes isoform 1.
- Source sequence(s)
-
AK147651, BB636293, BQ033024
- Consensus CDS
-
CCDS38046.1
- UniProtKB/Swiss-Prot
- Q5DTW2, Q80VG7
- UniProtKB/TrEMBL
-
Q3UH07
- Related
- ENSMUSP00000112293.3, ENSMUST00000116594.9
- Conserved Domains (3) summary
-
- cd09581
Location:860 → 942
- SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
- smart00561
Location:47 → 143
- MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
- pfam12140
Location:528 → 643
- SLED; SLED domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000068.8 Reference GRCm39 C57BL/6J
- Range
-
10375251..10600064
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006497491.4 → XP_006497554.1 scm-like with four MBT domains protein 2 isoform X1
See identical proteins and their annotated locations for XP_006497554.1
- UniProtKB/Swiss-Prot
- Q5DTW2, Q80VG7
- UniProtKB/TrEMBL
-
Q3UH63
- Conserved Domains (3) summary
-
- cd09581
Location:893 → 975
- SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
- smart00561
Location:47 → 143
- MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
- pfam12140
Location:528 → 643
- SLED; SLED domain
-
XM_006497498.4 → XP_006497561.1 scm-like with four MBT domains protein 2 isoform X2
See identical proteins and their annotated locations for XP_006497561.1
- UniProtKB/Swiss-Prot
- Q5DTW2, Q80VG7
- UniProtKB/TrEMBL
-
Q3UH07
- Conserved Domains (3) summary
-
- cd09581
Location:860 → 942
- SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
- smart00561
Location:47 → 143
- MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
- pfam12140
Location:528 → 643
- SLED; SLED domain
-
XM_030251809.2 → XP_030107669.1 scm-like with four MBT domains protein 2 isoform X5
- UniProtKB/TrEMBL
- Q3TH50, Q8BG70
- Related
- ENSMUSP00000110512.2, ENSMUST00000114862.8
- Conserved Domains (1) summary
-
- smart00561
Location:47 → 143
- MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
-
XM_006497490.5 → XP_006497553.1 scm-like with four MBT domains protein 2 isoform X1
See identical proteins and their annotated locations for XP_006497553.1
- UniProtKB/Swiss-Prot
- Q5DTW2, Q80VG7
- UniProtKB/TrEMBL
-
Q3UH63
- Conserved Domains (3) summary
-
- cd09581
Location:893 → 975
- SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
- smart00561
Location:47 → 143
- MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
- pfam12140
Location:528 → 643
- SLED; SLED domain
-
XM_006497494.5 → XP_006497557.1 scm-like with four MBT domains protein 2 isoform X1
See identical proteins and their annotated locations for XP_006497557.1
- UniProtKB/Swiss-Prot
- Q5DTW2, Q80VG7
- UniProtKB/TrEMBL
-
Q3UH63
- Conserved Domains (3) summary
-
- cd09581
Location:893 → 975
- SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
- smart00561
Location:47 → 143
- MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
- pfam12140
Location:528 → 643
- SLED; SLED domain
-
XM_006497492.4 → XP_006497555.1 scm-like with four MBT domains protein 2 isoform X1
See identical proteins and their annotated locations for XP_006497555.1
- UniProtKB/Swiss-Prot
- Q5DTW2, Q80VG7
- UniProtKB/TrEMBL
-
Q3UH63
- Related
- ENSMUSP00000040575.7, ENSMUST00000041105.7
- Conserved Domains (3) summary
-
- cd09581
Location:893 → 975
- SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
- smart00561
Location:47 → 143
- MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
- pfam12140
Location:528 → 643
- SLED; SLED domain
-
XM_030251810.2 → XP_030107670.1 scm-like with four MBT domains protein 2 isoform X5
- UniProtKB/TrEMBL
- Q3TH50, Q8BG70
- Conserved Domains (1) summary
-
- smart00561
Location:47 → 143
- MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
-
XM_006497493.4 → XP_006497556.1 scm-like with four MBT domains protein 2 isoform X1
See identical proteins and their annotated locations for XP_006497556.1
- UniProtKB/Swiss-Prot
- Q5DTW2, Q80VG7
- UniProtKB/TrEMBL
-
Q3UH63
- Conserved Domains (3) summary
-
- cd09581
Location:893 → 975
- SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
- smart00561
Location:47 → 143
- MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
- pfam12140
Location:528 → 643
- SLED; SLED domain
-
XM_006497496.5 → XP_006497559.1 scm-like with four MBT domains protein 2 isoform X1
See identical proteins and their annotated locations for XP_006497559.1
- UniProtKB/Swiss-Prot
- Q5DTW2, Q80VG7
- UniProtKB/TrEMBL
-
Q3UH63
- Conserved Domains (3) summary
-
- cd09581
Location:893 → 975
- SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
- smart00561
Location:47 → 143
- MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
- pfam12140
Location:528 → 643
- SLED; SLED domain
-
XM_006497499.3 → XP_006497562.1 scm-like with four MBT domains protein 2 isoform X3
- Conserved Domains (4) summary
-
- cd09581
Location:655 → 737
- SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
- smart00561
Location:145 → 237
- MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
- pfam12140
Location:290 → 405
- SLED; SLED domain
- cl17705
Location:52 → 133
- MBT; mbt repeat
-
XM_006497500.4 → XP_006497563.1 scm-like with four MBT domains protein 2 isoform X4
- Conserved Domains (3) summary
-
- cd09581
Location:617 → 699
- SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
- smart00561
Location:107 → 199
- MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
- pfam12140
Location:252 → 367
- SLED; SLED domain