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    ECM23 Ecm23p [ Saccharomyces cerevisiae S288C ]

    Gene ID: 856086, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ECM23
    Official Full Name
    Ecm23p
    Primary source
    SGD:S000005942
    Locus tag
    YPL021W
    See related
    AllianceGenome:SGD:S000005942; FungiDB:YPL021W; VEuPathDB:YPL021W
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Also known as
    SRD2
    Summary
    Enables sequence-specific DNA binding activity. Involved in pseudohyphal growth. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See ECM23 in Genome Data Viewer
    Location:
    chromosome: XVI
    Exon count:
    1
    Sequence:
    Chromosome: XVI; NC_001148.4 (511101..511664)

    Chromosome XVI - NC_001148.4Genomic Context describing neighboring genes Neighboring gene methylenetetrahydrofolate reductase (NAD(P)H) MET12 Neighboring gene ssDNA endodeoxyribonuclease RAD1 Neighboring gene SUMO protease ULP1 Neighboring gene vacuolar transporter chaperone

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001148.4

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The SRD2 gene is involved in Saccharomyces cerevisiae morphogenesis. Cañizares JV, et al. Arch Microbiol, 2002 Apr. PMID 11889490
    2. Sequestration of mRNAs Modulates the Timing of Translation during Meiosis in Budding Yeast. Jin L, et al. Mol Cell Biol, 2015 Oct. PMID 26217015, Free PMC Article
    3. A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Badis G, et al. Mol Cell, 2008 Dec 26. PMID 19111667, Free PMC Article
    4. Large scale identification of genes involved in cell surface biosynthesis and architecture in Saccharomyces cerevisiae. Lussier M, et al. Genetics, 1997 Oct. PMID 9335584, Free PMC Article
    5. Epistatic relationships reveal the functional organization of yeast transcription factors. Zheng J, et al. Mol Syst Biol, 2010 Oct 5. PMID 20959818, Free PMC Article

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables sequence-specific DNA binding HDA PubMed 
    enables sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell wall organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in pseudohyphal growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Ecm23p
    NP_015304.1
    • Non-essential protein of unconfirmed function; affects pre-rRNA processing, may act as a negative regulator of the transcription of genes involved in pseudohyphal growth; homologous to Srd1p

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001148.4 Reference assembly

      Range
      511101..511664
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001183835.1 → NP_015304.1  TPA: Ecm23p [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_015304.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D6W3Z1, Q02710
      UniProtKB/TrEMBL
      C8ZJ07, G2WPF7, N1NVZ6
      Conserved Domains (1) summary
      smart00401
      Location:127 → 178
      ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q02710.1

    Gene LinkOut

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