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    putative endodeoxyribonuclease [ Saccharomyces cerevisiae S288C ]

    Gene ID: 855304, updated on 18-Sep-2024

    Summary

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    Official Full Name
    putative endodeoxyribonuclease
    Primary source
    SGD:S000004875
    Locus tag
    YMR262W
    See related
    AllianceGenome:SGD:S000004875; FungiDB:YMR262W; VEuPathDB:YMR262W
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Predicted to enable metal ion binding activity and nuclease activity. Predicted to be involved in nucleic acid phosphodiester bond hydrolysis. Orthologous to human TATDN3 (TatD DNase domain containing 3). [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    Location:
    chromosome: XIII
    Exon count:
    1
    Sequence:
    Chromosome: XIII; NC_001145.3 (793726..794667)

    Chromosome XIII - NC_001145.3Genomic Context describing neighboring genes Neighboring gene Tif11p Neighboring gene trehalose 6-phosphate synthase/phosphatase complex subunit Neighboring gene Sap30p Neighboring gene Cue1p

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001145.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Interaction of Knr4 protein, a protein involved in cell wall synthesis, with tyrosine tRNA synthetase encoded by TYS1 in Saccharomyces cerevisiae. Dagkessamanskaia A, et al. FEMS Microbiol Lett, 2001 Jun 12. PMID 11410349
    2. The ubiquitin-proteasome system regulates meiotic chromosome organization. Yang X, et al. Proc Natl Acad Sci U S A, 2022 Apr 26. PMID 35439061, Free PMC Article
    3. Functional profiling of the Saccharomyces cerevisiae genome. Giaever G, et al. Nature, 2002 Jul 25. PMID 12140549
    4. The nucleotide sequence of Saccharomyces cerevisiae chromosome XIII. Bowman S, et al. Nature, 1997 May 29. PMID 9169872
    5. A comprehensive synthetic genetic interaction network governing yeast histone acetylation and deacetylation. Lin YY, et al. Genes Dev, 2008 Aug 1. PMID 18676811, Free PMC Article

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables hydrolase activity, acting on ester bonds IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables molecular_function ND
    No biological Data available
    more info
    		  
    enables nuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    putative endodeoxyribonuclease
    NP_013989.2
    • hypothetical protein; interacts weakly with Knr4p; YMR262W is not an essential gene

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001145.3 Reference assembly

      Range
      793726..794667
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001182769.2 → NP_013989.2  TPA: putative endodeoxyribonuclease [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_013989.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D6W088, P38430, Q6B2J9
      UniProtKB/TrEMBL
      A6ZMX7, B3LME9, C8ZFC8, N1NYR3
      Conserved Domains (1) summary
      pfam01026
      Location:5 → 313
      TatD_DNase; TatD related DNase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P38430.3

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