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    TOLLIP-DT TOLLIP divergent transcript [ Homo sapiens (human) ]

    Gene ID: 255512, updated on 8-Nov-2023

    Summary

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    Official Symbol
    TOLLIP-DTprovided by HGNC
    Official Full Name
    TOLLIP divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:27403
    See related
    Ensembl:ENSG00000255153 AllianceGenome:HGNC:27403
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TOLLIP-AS1
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    Genomic context

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    See TOLLIP-DT in Genome Data Viewer
    Location:
    11p15.5
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (1309708..1310707)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (1381337..1382336)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (1330938..1331937)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene mucin 5B, oligomeric mucus/gel-forming Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3050 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:1283433-1283938 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4288 Neighboring gene microRNA 6744 Neighboring gene toll interacting protein Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:1319647-1320378 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:1320379-1321110 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:1323133-1323656 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:1323657-1324180 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:1324181-1324704 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3052 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:1331258-1332019 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3053 Neighboring gene uncharacterized LOC124902606 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:1369804-1370356 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:1374637-1375384 Neighboring gene long intergenic non-protein coding RNA 2689 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:1380465-1380966 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:1380967-1381466

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Other Names

    • CTD-2245O6.1
    • TOLLIP antisense RNA 1 (head to head)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_029409.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC034741, DA359936
      Related
      ENST00000530897.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      1309708..1310707
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_025791792.1 Reference GRCh38.p14 PATCHES

      Range
      43974..44973
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      1381337..1382336
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases