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    LINC00661 long intergenic non-protein coding RNA 661 [ Homo sapiens (human) ]

    Gene ID: 126536, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC00661provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 661provided by HGNC
    Primary source
    HGNC:HGNC:27002
    See related
    Ensembl:ENSG00000205396 AllianceGenome:HGNC:27002
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 17.3) See more
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    Genomic context

    See LINC00661 in Genome Data Viewer
    Location:
    19p13.12
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (16015634..16027462)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (16149590..16161427)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (16126444..16138272)

    Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene cytochrome P450 4F2-like Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14194 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14195 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14196 Neighboring gene cytochrome P450 family 4 subfamily F member 9, pseudogene Neighboring gene uncharacterized LOC105372291 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:16145907-16146408 Neighboring gene long intergenic non-protein coding RNA 905 Neighboring gene sorting nexin 33 pseudogene 1 Neighboring gene olfactory receptor family 1 subfamily AB member 1 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_026828.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC004790, AI184190
      Related
      ENST00000549354.6

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

      Range
      16015634..16027462
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060943.1 Alternate T2T-CHM13v2.0

      Range
      16149590..16161427
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001034966.1: Suppressed sequence

      Description
      NM_001034966.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.