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    Ttc27 tetratricopeptide repeat domain 27 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 298782, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Ttc27provided by RGD
    Official Full Name
    tetratricopeptide repeat domain 27provided by RGD
    Primary source
    RGD:1305264
    See related
    EnsemblRapid:ENSRNOG00000033090 AllianceGenome:RGD:1305264
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1305264
    Summary
    Orthologous to human TTC27 (tetratricopeptide repeat domain 27). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Adrenal (RPKM 121.0), Thymus (RPKM 96.4) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ttc27 in Genome Data Viewer
    Location:
    6q13
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (26310696..26454045, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (20558756..20702126, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (21735833..21880008, complement)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S18 pseudogene Neighboring gene small nucleolar RNA SNORA48 Neighboring gene uncharacterized LOC108351178 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC134479327 Neighboring gene baculoviral IAP repeat-containing 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    tetratricopeptide repeat protein 27

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106706.1 → NP_001100176.1  tetratricopeptide repeat protein 27

      See identical proteins and their annotated locations for NP_001100176.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473947
      UniProtKB/TrEMBL
      A0A8I6ANW3, A6H9X5, D3ZTG2
      Related
      ENSRNOP00000094996.1, ENSRNOT00000116986.2
      Conserved Domains (2) summary
      sd00006
      Location:531 → 559
      TPR; TPR repeat [structural motif]
      pfam13414
      Location:567 → 629
      TPR_11; TPR repeat

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      26310696..26454045 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006239754.5 → XP_006239816.1  tetratricopeptide repeat protein 27 isoform X1

      UniProtKB/TrEMBL
      A0A8I6ANW3
      Conserved Domains (2) summary
      sd00006
      Location:531 → 559
      TPR; TPR repeat [structural motif]
      pfam13414
      Location:567 → 629
      TPR_11; TPR repeat
    Nucleotide Protein Strain
    Heading Accession and Version

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