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    HEY2-AS1 HEY2 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 105377986, updated on 17-Sep-2024

    Summary

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    Official Symbol
    HEY2-AS1provided by HGNC
    Official Full Name
    HEY2 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:55652
    See related
    Ensembl:ENSG00000237742 AllianceGenome:HGNC:55652
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See HEY2-AS1 in Genome Data Viewer
    Location:
    6q22.31
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (125577528..125749425, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (126766035..126937940, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (125898674..126070571, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986640 Neighboring gene uncharacterized LOC102723341 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:125711176-125711724 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25026 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:125765831-125766344 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:125766345-125766856 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:125849225-125850424 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:125854657-125855265 Neighboring gene NANOG hESC enhancer GRCh37_chr6:125870255-125870862 Neighboring gene MPRA-validated peak6111 silencer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:125991600-125992310 Neighboring gene long intergenic non-protein coding RNA 2523 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:126023017-126023671 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:126028243-126028789 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:126028790-126029335 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25027 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25028 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25029 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:126066495-126067162 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17518 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17519 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:126091955-126092877 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17520 Neighboring gene tRNA-Glu (anticodon CTC) 1-7 Neighboring gene hes related family bHLH transcription factor with YRPW motif 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_183490.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL078594, AL365259
      Related
      ENST00000656901.1

    2. NR_183491.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL078594, AL365259, AL389919

    3. NR_183492.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL078594
      Related
      ENST00000606001.1

    4. NR_183493.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL078594

    5. NR_183494.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL078594

    6. NR_183495.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL078594

    7. NR_183496.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL078594

    8. NR_183497.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL078594

    9. NR_183498.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL078594, AL365259, AL389919

    10. NR_183499.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL078594

    11. NR_183500.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL078594, AL365259

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      125577528..125749425 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      126766035..126937940 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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