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    Prp2l1 proline rich protein 2-like 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 287750, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Prp2l1provided by RGD
    Official Full Name
    proline rich protein 2-like 1provided by RGD
    Primary source
    RGD:735046
    See related
    EnsemblRapid:ENSRNOG00000042833 AllianceGenome:RGD:735046
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    PRP; PRP-2; Prp-5; Prp2l2
    Summary
    Predicted to be located in membrane. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Testes (RPKM 123.8), Brain (RPKM 76.7) and 7 other tissues See more
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    Genomic context

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    See Prp2l1 in Genome Data Viewer
    Location:
    10q32.1
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (88962298..89040600, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (88462262..88540642, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (91610662..91690865, complement)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134480884 Neighboring gene leucine rich repeat containing 37A Neighboring gene uncharacterized LOC134480885 Neighboring gene uncharacterized LOC103693460 Neighboring gene lysozyme-like 6 Neighboring gene reprimo-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. A single 12.5-kilobase androgen-regulated mRNA encoding multiple proline-rich polypeptides in the ventral prostate of the rat. Hemschoote K, et al. J Biol Chem, 1988 Dec 15. PMID 3198617
    2. The 4.4-kilodalton proline-rich polypeptides of the rat ventral prostate are the proteolytic products of a 637-kilodalton protein displaying highly repetitive sequences and encoded in a single exon. De Clercq N, et al. J Biol Chem, 1992 May 15. PMID 1577819
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    proline rich protein 2-like 1
    Names
    proline rich protein 2-like 2
    proline-rich protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419907.1 → NP_001406836.1  proline rich protein 2-like 1 precursor

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010
      Related
      ENSRNOP00000042316.7, ENSRNOT00000043156.7

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      88962298..89040600 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063268754.1 → XP_063124824.1  proline rich protein 2-like 1 isoform X3

    2. XM_063268752.1 → XP_063124822.1  proline rich protein 2-like 1 isoform X1

    3. XM_063268753.1 → XP_063124823.1  proline rich protein 2-like 1 isoform X2

    RNA

    1. XR_005490780.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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