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    Vcf2 VCP nuclear cofactor family member 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100359832, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Vcf2provided by RGD
    Official Full Name
    VCP nuclear cofactor family member 2provided by RGD
    Primary source
    RGD:2323310
    See related
    EnsemblRapid:ENSRNOG00000049908 EnsemblRapid:ENSRNOG00000090943 AllianceGenome:RGD:2323310
    Gene type
    protein coding
    RefSeq status
    INFERRED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Tmem29; Fam104b; Fam156a; Fam156b
    Summary
    Orthologous to human VCF2 (VCP nuclear cofactor family member 2). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Brain (RPKM 22.9), Lung (RPKM 21.8) and 9 other tissues See more
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    Genomic context

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    See Vcf2 in Genome Data Viewer
    Location:
    Xq12
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (22762022..22820680, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (19310182..19393156, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (20821296..20849672, complement)

    Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene basic leucine zipper and W2 domains 1, pseudogene 3 Neighboring gene 5'-aminolevulinate synthase 2 Neighboring gene apurinic/apyrimidinic endodeoxyribonuclease 2 Neighboring gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    transmembrane protein 29
    Names
    family with sequence similarity 104 member B
    family with sequence similarity 156, member A
    family with sequence similarity 156, member B
    rCG38975-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402344.1 → NP_001389273.1  transmembrane protein 29 isoform 1

      Status: INFERRED

      Source sequence(s)
      JAXUCZ010000021
      Related
      ENSRNOP00000088390.2, ENSRNOT00000093160.3

    2. NM_001408891.1 → NP_001395820.1  transmembrane protein 29 isoform 2

      Status: INFERRED

      Source sequence(s)
      JAXUCZ010000021
      Related
      ENSRNOP00000111367.1, ENSRNOT00000169441.1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086039.1 Reference GRCr8

      Range
      22762022..22820680 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063279692.1 → XP_063135762.1  transmembrane protein 29 isoform X1

    2. XM_006256808.5 → XP_006256870.1  transmembrane protein 29 isoform X4

      UniProtKB/TrEMBL
      A6KL67
      Conserved Domains (1) summary
      pfam15434
      Location:7 → 113
      FAM104; Family 104

    3. XM_017602280.3 → XP_017457769.1  transmembrane protein 29 isoform X2

      UniProtKB/TrEMBL
      A6KL67

    4. XM_006256807.5 → XP_006256869.1  transmembrane protein 29 isoform X3

      UniProtKB/TrEMBL
      A0A8I6AJ65, A6KL67
      Conserved Domains (1) summary
      pfam15434
      Location:15 → 121
      FAM104; Family 104
    Nucleotide Protein Strain
    Heading Accession and Version

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