U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Actr3b actin related protein 3B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362298, updated on 10-Oct-2024

    Summary

    Go to the top of the page Help
    Symbol
    Actr3bprovided by RGD
    Full Name
    actin related protein 3Bprovided by RGD
    Primary source
    RGD:1565759
    See related
    EnsemblRapid:ENSRNOG00000031855 AllianceGenome:RGD:1565759
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1565759
    Summary
    Predicted to contribute to actin filament binding activity. Orthologous to human ACTR3B (actin related protein 3B). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Brain (RPKM 221.9), Heart (RPKM 111.8) and 5 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Actr3b in Genome Data Viewer
    Location:
    4q11
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (9995553..10089422, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (9261631..9355496, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (5644287..5672708)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120102206 Neighboring gene uncharacterized LOC102548175 Neighboring gene uncharacterized LOC134486709 Neighboring gene uncharacterized LOC134486710 Neighboring gene uncharacterized LOC120102207 Neighboring gene X-ray repair cross complementing 2 Neighboring gene protein transport protein Sec61 subunit gamma pseudogene

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    contributes_to actin filament binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    actin-related protein 3B
    Names
    ARP3 actin related protein 3 homolog B
    actin-related protein 3B-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001191860.1 → NP_001178789.1  actin-related protein 3B

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/TrEMBL
      A0A8I6A7C9, A0A8I6GL35
      Related
      ENSRNOP00000095302.1, ENSRNOT00000108546.2
      Conserved Domains (1) summary
      PTZ00280
      Location:2 → 417
      PTZ00280; Actin-related protein 3; Provisional

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      9995553..10089422 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039107746.2 → XP_038963674.1  actin-related protein 3B isoform X2

      UniProtKB/TrEMBL
      A0A8I6A7C9
      Conserved Domains (1) summary
      PTZ00280
      Location:1 → 329
      PTZ00280; Actin-related protein 3; Provisional

    2. XM_039107745.1 → XP_038963673.1  actin-related protein 3B isoform X4

      Conserved Domains (1) summary
      PTZ00280
      Location:2 → 280
      PTZ00280; Actin-related protein 3; Provisional

    3. XM_039107743.2 → XP_038963671.1  actin-related protein 3B isoform X3

      UniProtKB/TrEMBL
      A6KJJ7
      Conserved Domains (1) summary
      PTZ00280
      Location:1 → 288
      PTZ00280; Actin-related protein 3; Provisional

    4. XM_039107744.2 → XP_038963672.1  actin-related protein 3B isoform X3

      UniProtKB/TrEMBL
      A6KJJ7
      Conserved Domains (1) summary
      PTZ00280
      Location:1 → 288
      PTZ00280; Actin-related protein 3; Provisional

    5. XM_063286225.1 → XP_063142295.1  actin-related protein 3B isoform X2

    6. XM_063286224.1 → XP_063142294.1  actin-related protein 3B isoform X1

      Related
      ENSRNOP00000110978.1, ENSRNOT00000160106.1

    7. XM_039107747.2 → XP_038963675.1  actin-related protein 3B isoform X5

      Conserved Domains (1) summary
      PTZ00280
      Location:2 → 197
      PTZ00280; Actin-related protein 3; Provisional
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools