Septin3 septin 3 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Septin3provided by RGD
Official Full Name: septin 3provided by RGD
Primary source: RGD:621745
See related: EnsemblRapid:ENSRNOG00000007686 AllianceGenome:RGD:621745
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Sep3; Sept3
Summary: Enables GTP binding activity. Predicted to be involved in cellular protein localization and cytoskeleton-dependent cytokinesis. Located in several cellular components, including cytosol; presynaptic cytoskeleton; and presynaptic membrane. Is active in presynapse. Orthologous to human SEPTIN3 (septin 3). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Brain (RPKM 296.4) and Testes (RPKM 25.4) See more
Orthologs: human mouse all
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Genomic context

Location:: 7q34

Exon count:: 15

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	7	NC_086025.1 (115659414..115691173)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	7	NC_051342.1 (113783217..113811089)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	7	NC_005106.4 (123506535..123526542)

Chromosome 7 - NC_086025.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Septin 3 localizes in the membrane microdomains of the synaptic plasma membrane in adult brain and may have important roles in the membrane dynamics of neurons.
Title: Biochemical characterization of membrane-associated septin from rat brain.
Sept3 is a neurone-specific developmentally regulated protein highly enriched in nerve terminals which supports a secretory role in synaptic vesicle recycling.
Title: Septin 3 (G-septin) is a developmentally regulated phosphoprotein enriched in presynaptic nerve terminals.

Submit: New GeneRIF Correction

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables GTP binding	IDA Inferred from Direct Assay more info	PubMed
enables GTP binding	IEA Inferred from Electronic Annotation more info
enables GTPase activity	IBA Inferred from Biological aspect of Ancestor more info
enables identical protein binding	ISO Inferred from Sequence Orthology more info
enables molecular adaptor activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in cytoskeleton-dependent cytokinesis	IBA Inferred from Biological aspect of Ancestor more info
involved_in protein catabolic process at presynapse	ISO Inferred from Sequence Orthology more info
involved_in protein localization	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in cell division site	IBA Inferred from Biological aspect of Ancestor more info
is_active_in microtubule cytoskeleton	IBA Inferred from Biological aspect of Ancestor more info
is_active_in presynapse	IDA Inferred from Direct Assay more info	PubMed
is_active_in presynapse	ISO Inferred from Sequence Orthology more info
located_in presynapse	ISO Inferred from Sequence Orthology more info
is_active_in presynaptic cytoskeleton	IBA Inferred from Biological aspect of Ancestor more info
located_in presynaptic membrane	IDA Inferred from Direct Assay more info	PubMed
part_of septin complex	IBA Inferred from Biological aspect of Ancestor more info
part_of septin complex	IEA Inferred from Electronic Annotation more info
part_of septin complex	ISO Inferred from Sequence Orthology more info
part_of septin complex	ISS Inferred from Sequence or Structural Similarity more info
is_active_in septin ring	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: neuronal-specific septin-3

Names: G-septin alpha; P40

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_019375.2 → NP_062248.2 neuronal-specific septin-3

Status: VALIDATED

Source sequence(s)

JAXUCZ010000007

UniProtKB/Swiss-Prot

Q9R245, Q9WU34, Q9WU35

UniProtKB/TrEMBL

A0A8I6A6E2, A6HT54

Conserved Domains (1) summary

cd01850
Location:59 → 333

CDC_Septin; CDC/Septin GTPase family

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086025.1 Reference GRCr8

Range

115659414..115691173

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_063264164.1 → XP_063120234.1 neuronal-specific septin-3 isoform X2

UniProtKB/TrEMBL

A0A8I6AME4

Related

ENSRNOP00000094557.1, ENSRNOT00000108676.2
XM_063264163.1 → XP_063120233.1 neuronal-specific septin-3 isoform X2

UniProtKB/TrEMBL

A0A8I6AME4
XM_039079788.2 → XP_038935716.1 neuronal-specific septin-3 isoform X1

UniProtKB/TrEMBL

A0A8I5ZX16, A0A8I6G9D9

Related

ENSRNOP00000083723.1, ENSRNOT00000104827.2

Conserved Domains (1) summary

cd01850
Location:540 → 814

CDC_Septin; CDC/Septin GTPase family
XM_039079790.2 → XP_038935718.1 neuronal-specific septin-3 isoform X3

UniProtKB/TrEMBL

A6HT56, F1LMH0

Related

ENSRNOP00000010491.6, ENSRNOT00000010491.8

Conserved Domains (1) summary

cd01850
Location:46 → 320

CDC_Septin; CDC/Septin GTPase family