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    Zfp266 zinc finger protein 266 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 367034, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Zfp266provided by RGD
    Official Full Name
    zinc finger protein 266provided by RGD
    Primary source
    RGD:1308643
    See related
    EnsemblRapid:ENSRNOG00000034037 AllianceGenome:RGD:1308643
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Zfp426; Znf266; Zfp426l
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF812P (zinc finger protein 812, pseudogene). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Adrenal (RPKM 178.4), Thymus (RPKM 176.8) and 9 other tissues See more
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    Genomic context

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    See Zfp266 in Genome Data Viewer
    Location:
    8q13
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (27307015..27338624, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (19030766..19061381, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (21511831..21543275, complement)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 26 Neighboring gene U6 spliceosomal RNA Neighboring gene zinc finger protein 426 Neighboring gene ribosomal protein SA, pseudogene 20 Neighboring gene zinc finger protein 846

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 426-like
    Names
    zinc finger protein 426

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001135018.1 → NP_001128490.1  zinc finger protein 426-like

      See identical proteins and their annotated locations for NP_001128490.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000008
      UniProtKB/TrEMBL
      F1MAL0
      Conserved Domains (4) summary
      smart00349
      Location:41 → 97
      KRAB; krueppel associated box
      COG5048
      Location:397 → 588
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:429 → 449
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:371 → 393
      zf-C2H2; Zinc finger, C2H2 type

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      27307015..27338624 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039081847.2 → XP_038937775.1  zinc finger protein 426-like isoform X3

      Conserved Domains (4) summary
      COG5048
      Location:328 → 519
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:360 → 380
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:302 → 324
      zf-C2H2; Zinc finger, C2H2 type
      cl02581
      Location:1 → 28
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

    2. XM_063265865.1 → XP_063121935.1  zinc finger protein 426-like isoform X1

      UniProtKB/TrEMBL
      F1MAL0

    3. XM_039081846.2 → XP_038937774.1  zinc finger protein 426-like isoform X3

      Conserved Domains (4) summary
      COG5048
      Location:328 → 519
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:360 → 380
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:302 → 324
      zf-C2H2; Zinc finger, C2H2 type
      cl02581
      Location:1 → 28
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

    4. XM_039081845.2 → XP_038937773.1  zinc finger protein 426-like isoform X3

      Conserved Domains (4) summary
      COG5048
      Location:328 → 519
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:360 → 380
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:302 → 324
      zf-C2H2; Zinc finger, C2H2 type
      cl02581
      Location:1 → 28
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

    5. XM_039081843.2 → XP_038937771.1  zinc finger protein 426-like isoform X1

      UniProtKB/TrEMBL
      F1MAL0
      Conserved Domains (4) summary
      smart00349
      Location:41 → 97
      KRAB; krueppel associated box
      COG5048
      Location:397 → 588
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:429 → 449
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:371 → 393
      zf-C2H2; Zinc finger, C2H2 type

    6. XM_039081844.2 → XP_038937772.1  zinc finger protein 426-like isoform X2

      Conserved Domains (4) summary
      COG5048
      Location:370 → 561
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:402 → 422
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:344 → 366
      zf-C2H2; Zinc finger, C2H2 type
      pfam01352
      Location:40 → 80
      KRAB; KRAB box

    7. XM_017595777.3 → XP_017451266.1  zinc finger protein 426-like isoform X1

      UniProtKB/TrEMBL
      F1MAL0
      Conserved Domains (4) summary
      smart00349
      Location:41 → 97
      KRAB; krueppel associated box
      COG5048
      Location:397 → 588
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:429 → 449
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:371 → 393
      zf-C2H2; Zinc finger, C2H2 type

    8. XM_063265863.1 → XP_063121933.1  zinc finger protein 426-like isoform X1

      UniProtKB/TrEMBL
      F1MAL0

    9. XM_039081848.2 → XP_038937776.1  zinc finger protein 426-like isoform X3

      Conserved Domains (4) summary
      COG5048
      Location:328 → 519
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:360 → 380
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:302 → 324
      zf-C2H2; Zinc finger, C2H2 type
      cl02581
      Location:1 → 28
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

    10. XM_039081840.2 → XP_038937768.1  zinc finger protein 426-like isoform X1

      UniProtKB/TrEMBL
      F1MAL0
      Conserved Domains (4) summary
      smart00349
      Location:41 → 97
      KRAB; krueppel associated box
      COG5048
      Location:397 → 588
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:429 → 449
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:371 → 393
      zf-C2H2; Zinc finger, C2H2 type

    11. XM_039081834.2 → XP_038937762.1  zinc finger protein 426-like isoform X1

      UniProtKB/TrEMBL
      F1MAL0
      Conserved Domains (4) summary
      smart00349
      Location:41 → 97
      KRAB; krueppel associated box
      COG5048
      Location:397 → 588
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:429 → 449
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:371 → 393
      zf-C2H2; Zinc finger, C2H2 type

    12. XM_039081841.2 → XP_038937769.1  zinc finger protein 426-like isoform X1

      UniProtKB/TrEMBL
      F1MAL0
      Conserved Domains (4) summary
      smart00349
      Location:41 → 97
      KRAB; krueppel associated box
      COG5048
      Location:397 → 588
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:429 → 449
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:371 → 393
      zf-C2H2; Zinc finger, C2H2 type

    13. XM_063265864.1 → XP_063121934.1  zinc finger protein 426-like isoform X1

      UniProtKB/TrEMBL
      F1MAL0

    14. XM_039081835.2 → XP_038937763.1  zinc finger protein 426-like isoform X1

      UniProtKB/TrEMBL
      F1MAL0
      Conserved Domains (4) summary
      smart00349
      Location:41 → 97
      KRAB; krueppel associated box
      COG5048
      Location:397 → 588
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:429 → 449
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:371 → 393
      zf-C2H2; Zinc finger, C2H2 type

    15. XM_039081836.2 → XP_038937764.1  zinc finger protein 426-like isoform X1

      UniProtKB/TrEMBL
      F1MAL0
      Conserved Domains (4) summary
      smart00349
      Location:41 → 97
      KRAB; krueppel associated box
      COG5048
      Location:397 → 588
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:429 → 449
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:371 → 393
      zf-C2H2; Zinc finger, C2H2 type

    16. XM_039081842.2 → XP_038937770.1  zinc finger protein 426-like isoform X1

      UniProtKB/TrEMBL
      F1MAL0
      Conserved Domains (4) summary
      smart00349
      Location:41 → 97
      KRAB; krueppel associated box
      COG5048
      Location:397 → 588
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:429 → 449
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:371 → 393
      zf-C2H2; Zinc finger, C2H2 type

    17. XM_063265866.1 → XP_063121936.1  zinc finger protein 426-like isoform X1

      UniProtKB/TrEMBL
      F1MAL0
      Related
      ENSRNOP00000042506.5, ENSRNOT00000042903.7
    Nucleotide Protein Strain
    Heading Accession and Version

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