U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SNF11 Snf11p [ Saccharomyces cerevisiae S288C ]

    Gene ID: 851645, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SNF11
    Official Full Name
    Snf11p
    Primary source
    SGD:S000002480
    Locus tag
    YDR073W
    See related
    AllianceGenome:SGD:S000002480; FungiDB:YDR073W; VEuPathDB:YDR073W
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Involved in positive regulation of transcription by RNA polymerase II. Located in cytosol and nucleus. Part of SWI/SNF complex. [provided by Alliance of Genome Resources, Apr 2022]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SNF11 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    1
    Sequence:
    Chromosome: IV; NC_001136.10 (592439..592948)

    Chromosome IV - NC_001136.10Genomic Context describing neighboring genes Neighboring gene polyamine acetyltransferase Neighboring gene inositolphosphotransferase Neighboring gene trehalose-phosphatase TPS2 Neighboring gene phosphoprotein phosphatase PP4 catalytic subunit PPH3

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_001136.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. High-Throughput Identification of Adaptive Mutations in Experimentally Evolved Yeast Populations. Payen C, et al. PLoS Genet, 2016 Oct. PMID 27727276, Free PMC Article
    2. A chromatin-based mechanism for limiting divergent noncoding transcription. Marquardt S, et al. Cell, 2014 Jun 19. PMID 24949978, Free PMC Article
    3. Molecular evolution of minisatellites in hemiascomycetous yeasts. Richard GF, et al. Mol Biol Evol, 2006 Jan. PMID 16177231
    4. The chromo domain protein chd1p from budding yeast is an ATP-dependent chromatin-modifying factor. Tran HG, et al. EMBO J, 2000 May 15. PMID 10811623, Free PMC Article
    5. Subunits of the yeast SWI/SNF complex are members of the actin-related protein (ARP) family. Peterson CL, et al. J Biol Chem, 1998 Sep 11. PMID 9726966

    See all (60) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SWI/SNF complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Snf11p
    NP_010358.3
    • Subunit of the SWI/SNF chromatin remodeling complex; involved in transcriptional regulation; interacts with a highly conserved 40-residue sequence of Snf2p; relocates to the cytosol under hypoxic conditions

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001136.10 Reference assembly

      Range
      592439..592948
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001180381.3 → NP_010358.3  TPA: Snf11p [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_010358.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D6VS59, P38956
      UniProtKB/TrEMBL
      C8Z4Z1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P38956.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools