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    Lysmd2 LysM domain containing 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 300839, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Lysmd2provided by RGD
    Official Full Name
    LysM domain containing 2provided by RGD
    Primary source
    RGD:1304585
    See related
    EnsemblRapid:ENSRNOG00000010642 AllianceGenome:RGD:1304585
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1304585
    Summary
    Orthologous to human LYSMD2 (LysM domain containing 2). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Heart (RPKM 76.3), Brain (RPKM 58.5) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Lysmd2 in Genome Data Viewer
    Location:
    8q24
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (85259443..85274876)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (76378984..76394396)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (82560363..82576662)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134480207 Neighboring gene tropomodulin 3 Neighboring gene tropomodulin 2 Neighboring gene secretogranin III Neighboring gene uncharacterized LOC120094210

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    lysM and putative peptidoglycan-binding domain-containing protein 2
    Names
    LysM, putative peptidoglycan-binding, domain containing 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106839.2 → NP_001100309.2  lysM and putative peptidoglycan-binding domain-containing protein 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000008
      UniProtKB/TrEMBL
      A0A8J8XSR6, A6I1E6
      Conserved Domains (2) summary
      PRK10783
      Location:38 → 131
      mltD; membrane-bound lytic murein transglycosylase D; Provisional
      cd00118
      Location:71 → 115
      LysM; Lysin Motif is a small domain involved in binding peptidoglycan

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      85259443..85274876
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006243406.5 → XP_006243468.1  lysM and putative peptidoglycan-binding domain-containing protein 2 isoform X1

      See identical proteins and their annotated locations for XP_006243468.1

      Conserved Domains (1) summary
      cd00118
      Location:204 → 224
      LysM; Lysine Motif is a small domain involved in binding peptidoglycan

    2. XM_063265182.1 → XP_063121252.1  lysM and putative peptidoglycan-binding domain-containing protein 2 isoform X2

    3. XM_063265183.1 → XP_063121253.1  lysM and putative peptidoglycan-binding domain-containing protein 2 isoform X3

      UniProtKB/TrEMBL
      A0A0G2K146
      Related
      ENSRNOP00000071697.1, ENSRNOT00000083410.3
    Nucleotide Protein Strain
    Heading Accession and Version

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