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    LINC01606 long intergenic non-protein coding RNA 1606 [ Homo sapiens (human) ]

    Gene ID: 100507651, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC01606provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1606provided by HGNC
    Primary source
    HGNC:HGNC:51656
    See related
    Ensembl:ENSG00000253301 AllianceGenome:HGNC:51656
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 8.0) See more
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    Genomic context

    See LINC01606 in Genome Data Viewer
    Location:
    8q12.1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (57218276..57232954)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (57639823..57654503)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (58130835..58145513)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene 3'(2'), 5'-bisphosphate nucleotidase 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19212 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:57934309-57935282 Neighboring gene NANOG hESC enhancer GRCh37_chr8:58020294-58020880 Neighboring gene RNA, 5S ribosomal pseudogene 266 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:58118103-58118604 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:58121391-58122590 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:58122972-58123472 Neighboring gene MPRA-validated peak7032 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:58172381-58172962 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:58173547-58174128 Neighboring gene uncharacterized LOC286177 Neighboring gene long intergenic non-protein coding RNA 588

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038235.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC025674
      Related
      ENST00000519160.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      57218276..57232954
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NT_187566.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      56690..71368
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      57639823..57654503
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)