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    ECM8 Ecm8p [ Saccharomyces cerevisiae S288C ]

    Gene ID: 852368, updated on 29-Jun-2024

    Summary

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    Gene symbol
    ECM8
    Gene description
    Ecm8p
    Primary source
    FungiDB:YBR076W
    Locus tag
    YBR076W
    See related
    SGD:S000000280; AllianceGenome:SGD:S000000280; VEuPathDB:YBR076W
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Predicted to be involved in cell wall organization. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See ECM8 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    1
    Sequence:
    Chromosome: II; NC_001134.8 (390227..391291)

    Chromosome II - NC_001134.8Genomic Context describing neighboring genes Neighboring gene DNA-dependent ATPase RDH54 Neighboring gene Pff1p Neighboring gene Slm4p Neighboring gene Ecm33p

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001134.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large scale identification of genes involved in cell surface biosynthesis and architecture in Saccharomyces cerevisiae. Lussier M, et al. Genetics, 1997 Oct. PMID 9335584, Free PMC Article
    2. Integrating high-throughput genetic interaction mapping and high-content screening to explore yeast spindle morphogenesis. Vizeacoumar FJ, et al. J Cell Biol, 2010 Jan 11. PMID 20065090, Free PMC Article
    3. A Snf2 family ATPase complex required for recruitment of the histone H2A variant Htz1. Krogan NJ, et al. Mol Cell, 2003 Dec. PMID 14690608
    4. Genetic interaction network of the Saccharomyces cerevisiae type 1 phosphatase Glc7. Logan MR, et al. BMC Genomics, 2008 Jul 15. PMID 18627629, Free PMC Article
    5. Investigation of RNA metabolism through large-scale genetic interaction profiling in yeast. Decourty L, et al. Nucleic Acids Res, 2021 Sep 7. PMID 34358317, Free PMC Article

    See all (19) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in cell wall organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Ecm8p
    NP_009632.2
    • Non-essential hypothetical protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001134.8 Reference assembly

      Range
      390227..391291
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001178424.2 → NP_009632.2  TPA: Ecm8p [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_009632.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D6VQ75, P38246
      UniProtKB/TrEMBL
      A0A8H4F6E4, A6ZL19, G2W981, N1P9E7
      Conserved Domains (2) summary
      pfam14616
      Location:164 → 282
      DUF4451; Domain of unknown function (DUF4451)
      cl23784
      Location:261 → 342
      RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P38246.2

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