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    [ Saccharomyces cerevisiae S288C ]

    Gene ID: 853483, updated on 22-Aug-2024

    Summary

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    Primary source
    FungiDB:YJR026W
    Locus tag
    YJR026W
    See related
    SGD:S000003787; AllianceGenome:SGD:S000003787; VEuPathDB:YJR026W
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Predicted to enable RNA binding activity. Predicted to be involved in transposition, RNA-mediated. Predicted to be located in retrotransposon nucleocapsid. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    Location:
    chromosome: X
    Exon count:
    1
    Sequence:
    Chromosome: X; NC_001142.9 (472760..474082)

    Chromosome X - NC_001142.9Genomic Context describing neighboring genes Neighboring gene methylthioribulose 1-phosphate dehydratase MDE1 Neighboring gene 3-hydroxyanthranilate 3,4-dioxygenase Neighboring gene gag-pol fusion protein Neighboring gene gag protein Neighboring gene gag-pol fusion protein Neighboring gene Rbh2p

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001142.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Ty1 gag enhances the stability and nuclear export of Ty1 mRNA. Checkley MA, et al. Traffic, 2013 Jan. PMID 22998189, Free PMC Article
    2. Happy together: the life and times of Ty retrotransposons and their hosts. Lesage P, et al. Cytogenet Genome Res, 2005. PMID 16093660
    3. Evolutionary genomics of transposable elements in Saccharomyces cerevisiae. Carr M, et al. PLoS One, 2012. PMID 23226439, Free PMC Article
    4. Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Kim JM, et al. Genome Res, 1998 May. PMID 9582191
    5. Co-translational localization of an LTR-retrotransposon RNA to the endoplasmic reticulum nucleates virus-like particle assembly sites. Doh JH, et al. PLoS Genet, 2014 Mar. PMID 24603646, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in retrotransposition ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    involved_in viral translational frameshifting IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in retrotransposon nucleocapsid ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    gag protein
    NP_012561.3
    • Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001142.9 Reference assembly

      Range
      472760..474082
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001181684.3 → NP_012561.3  TPA: gag protein [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_012561.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D6VWK0, P08405, P0CX74, P0CX75, P0CX76, P47097, Q07155, Q66R50
      Conserved Domains (1) summary
      pfam01021
      Location:17 → 114
      TYA; TYA transposon protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0CX74.1
    P0CX75.1
    P0CX76.1

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