U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    carboxymethylenebutenolidase [ Saccharomyces cerevisiae S288C ]

    Gene ID: 851472, updated on 3-Nov-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    carboxymethylenebutenolidase
    Primary source
    SGD:S000002244
    Locus tag
    YDL086W
    See related
    AllianceGenome:SGD:S000002244; FungiDB:YDL086W; VEuPathDB:YDL086W
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Predicted to enable carboxymethylenebutenolidase activity. Located in mitochondrion. [provided by Alliance of Genome Resources, Nov 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: IV
    Exon count:
    1
    Sequence:
    Chromosome: IV; NC_001136.10 (301413..302234)

    Chromosome IV - NC_001136.10Genomic Context describing neighboring genes Neighboring gene FG-nucleoporin ASM4 Neighboring gene Luc7p Neighboring gene uncharacterized protein Neighboring gene NADH-ubiquinone reductase (H(+)-translocating) NDE2

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_001136.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The COG database: a tool for genome-scale analysis of protein functions and evolution. Tatusov RL, et al. Nucleic Acids Res, 2000 Jan 1. PMID 10592175, Free PMC Article
    2. Comparative analysis of Saccharomyces cerevisiae WW domains and their interacting proteins. Hesselberth JR, et al. Genome Biol, 2006. PMID 16606443, Free PMC Article
    3. The zinc-finger transcription factor Sfp1 imprints specific classes of mRNAs and links their synthesis to cytoplasmic decay. Kelbert M, et al. Elife, 2024 Oct 2. PMID 39356734, Free PMC Article
    4. Subcellular localization of the yeast proteome. Kumar A, et al. Genes Dev, 2002 Mar 15. PMID 11914276, Free PMC Article
    5. Identification of karyopherins involved in the nuclear import of RNA exosome subunit Rrp6 in Saccharomyces cerevisiae. Gonzales-Zubiate FA, et al. J Biol Chem, 2017 Jul 21. PMID 28539363, Free PMC Article

    See all (23) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables carboxymethylenebutenolidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables carboxymethylenebutenolidase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm HDA PubMed 
    located_in mitochondrion HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    carboxymethylenebutenolidase
    NP_010197.1
    • Putative carboxymethylenebutenolidase; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YDL086W is not an essential gene

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001136.10 Reference assembly

      Range
      301413..302234
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001180145.1 → NP_010197.1  TPA: carboxymethylenebutenolidase [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_010197.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D6VRR2, Q07505
      UniProtKB/TrEMBL
      B3LGY1, B5VFI0, C7GJM7, C8Z6L7, G2WC76, N1P5Y9
      Conserved Domains (1) summary
      COG0412
      Location:4 → 256
      DLH; Dienelactone hydrolase [Secondary metabolites biosynthesis, transport and catabolism]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q07505.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools