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    LOC101930028 uncharacterized LOC101930028 [ Homo sapiens (human) ]

    Gene ID: 101930028, updated on 22-Oct-2024

    Summary

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    Gene symbol
    LOC101930028
    Gene description
    uncharacterized LOC101930028
    See related
    Ensembl:ENSG00000250626
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 1.1) See more
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    Genomic context

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    See LOC101930028 in Genome Data Viewer
    Location:
    4q35.2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (188768982..188818502, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (192122109..192171829, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (189690136..189739656, complement)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene RNA, U7 small nuclear 192 pseudogene Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:189655173-189656372 Neighboring gene mitochondrial translation release factor 1 like pseudogene Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_77155 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_77214 Neighboring gene long intergenic non-protein coding RNA 2508 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:189744366-189745364 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:189745365-189746362 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:189862417-189863616 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:189967637-189968466 Neighboring gene uncharacterized LOC105377611 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:189979694-189980893 Neighboring gene uncharacterized LOC105377612 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:189981059-189981697

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_188358.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC017063, AC093909
      Related
      ENST00000659127.1

    2. NR_188359.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC093909
      Related
      ENST00000745576.1

    3. NR_188360.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC093909
      Related
      ENST00000745557.1

    4. NR_188361.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC093909
      Related
      ENST00000745584.1

    5. NR_188362.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC093909

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      188768982..188818502 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      192122109..192171829 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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