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    ENDOV endonuclease V [ Homo sapiens (human) ]

    Gene ID: 284131, updated on 28-Oct-2024

    Summary

    Official Symbol
    ENDOVprovided by HGNC
    Official Full Name
    endonuclease Vprovided by HGNC
    Primary source
    HGNC:HGNC:26640
    See related
    Ensembl:ENSG00000173818 MIM:619821; AllianceGenome:HGNC:26640
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    Enables DNA binding activity; RNA endonuclease activity, producing 5'-phosphomonoesters; and single-stranded RNA binding activity. Predicted to be involved in DNA repair. Located in cytoplasmic stress granule and nucleolus. [provided by Alliance of Genome Resources, Oct 2024]
    Expression
    Ubiquitous expression in testis (RPKM 3.1), prostate (RPKM 2.3) and 25 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See ENDOV in Genome Data Viewer
    Location:
    17q25.3
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (80415167..80438086)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (81317021..81339980)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (78388967..78411886)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9102 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9103 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78195951-78196788 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78196789-78197626 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78200105-78200606 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78209849-78210638 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78210639-78211426 Neighboring gene solute carrier family 26 member 11 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:78227308-78228024 Neighboring gene SLC26A11-RNF213 intergenic CAGE-defined mid-level expression enhancer Neighboring gene CRISPRi-validated cis-regulatory element chr17.5742 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9104 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9105 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9106 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:78237270-78237826 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12933 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12934 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9107 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78247837-78248435 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78251821-78252439 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78258533-78259093 Neighboring gene ring finger protein 213 Neighboring gene RNF213 antisense RNA 1 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr17:78345568-78346767 Neighboring gene MPRA-validated peak3024 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78354122-78354622 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr17:78359110-78360309 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78369069-78369570 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78371216-78371723 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78371724-78372230 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12935 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78398753-78399254 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78399255-78399754 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78415272-78415938 Neighboring gene microRNA 4730 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:78419431-78420213 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:78428217-78429046 Neighboring gene Sharpr-MPRA regulatory region 4093 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12936 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78441725-78442449 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78448861-78449394 Neighboring gene Sharpr-MPRA regulatory region 3125 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78467323-78467823 Neighboring gene neuronal pentraxin 1 Neighboring gene Sharpr-MPRA regulatory region 6979 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78500540-78501513 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:78509630-78510257 Neighboring gene ribosomal protein L32 pseudogene 31

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • FLJ35220, MGC74455

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables RNA endonuclease activity, producing 5'-phosphomonoesters IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables RNA endonuclease activity, producing 5'-phosphomonoesters IDA
    Inferred from Direct Assay
    more info
    PubMed 
    NOT enables endodeoxyribonuclease activity, producing 5'-phosphomonoesters IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables endodeoxyribonuclease activity, producing 5'-phosphomonoesters ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables magnesium ion binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables magnesium ion binding TAS
    Traceable Author Statement
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables single-stranded RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables single-stranded RNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in DNA repair ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytoplasmic stress granule IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytoplasmic stress granule IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    endonuclease V
    Names
    hEndoV
    inosine-specific endoribonuclease
    NP_001158109.1
    NP_001158110.1
    NP_001339689.1
    NP_001339690.1
    NP_775898.2
    XP_005257303.1
    XP_006721900.1
    XP_011522957.1
    XP_011522958.1
    XP_011522959.1
    XP_011522960.1
    XP_011522962.1
    XP_011522963.1
    XP_011522964.1
    XP_011522965.1
    XP_011522968.1
    XP_011522969.1
    XP_011522971.1
    XP_011522972.1
    XP_011522973.1
    XP_016879997.1
    XP_016879999.1
    XP_016880002.1
    XP_047291765.1
    XP_047291766.1
    XP_047291767.1
    XP_047291768.1
    XP_047291769.1
    XP_047291770.1
    XP_047291771.1
    XP_047291772.1
    XP_047291773.1
    XP_054171778.1
    XP_054171779.1
    XP_054171780.1
    XP_054171781.1
    XP_054171782.1
    XP_054171783.1
    XP_054171784.1
    XP_054171785.1
    XP_054171786.1
    XP_054171787.1
    XP_054171788.1
    XP_054171789.1
    XP_054171790.1
    XP_054171791.1
    XP_054171792.1
    XP_054171793.1
    XP_054171794.1
    XP_054171795.1
    XP_054171796.1
    XP_054171797.1
    XP_054171798.1
    XP_054171799.1
    XP_054171800.1
    XP_054171801.1
    XP_054171802.1
    XP_054171803.1
    XP_054171804.1
    XP_054171805.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001164637.3NP_001158109.1  endonuclease V isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC120024, AK092539, AK096344, BM714470, KC877673
      Consensus CDS
      CCDS54173.1
      UniProtKB/Swiss-Prot
      Q8N8Q3
      Related
      ENSP00000431036.1, ENST00000520367.5
      Conserved Domains (1) summary
      cd06559
      Location:17200
      Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
    2. NM_001164638.3NP_001158110.1  endonuclease V isoform 3

      See identical proteins and their annotated locations for NP_001158110.1

      Status: VALIDATED

      Source sequence(s)
      AK092539, BC064545
      Consensus CDS
      CCDS54174.1
      UniProtKB/Swiss-Prot
      Q8N8Q3
      Related
      ENSP00000317810.5, ENST00000323854.9
      Conserved Domains (1) summary
      cd06559
      Location:17200
      Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
    3. NM_001352760.3NP_001339689.1  endonuclease V isoform 4

      Status: VALIDATED

      Source sequence(s)
      AC120024, BU553848
      Conserved Domains (1) summary
      cd06559
      Location:17245
      Endonuclease_V; a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
    4. NM_001352761.3NP_001339690.1  endonuclease V isoform 5

      Status: VALIDATED

      Source sequence(s)
      AC120024
      Conserved Domains (1) summary
      cd06559
      Location:17245
      Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
    5. NM_173627.5NP_775898.2  endonuclease V isoform 1

      See identical proteins and their annotated locations for NP_775898.2

      Status: VALIDATED

      Source sequence(s)
      AC120024, AK096344, BM714470, KC877673
      Consensus CDS
      CCDS54172.1
      UniProtKB/Swiss-Prot
      I3L3S4, Q6P2G2, Q86X99, Q8N8Q3, Q8NAK0
      Related
      ENSP00000429190.1, ENST00000518137.6
      Conserved Domains (1) summary
      cd06559
      Location:17245
      Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases

    RNA

    1. NR_148041.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC120024, BM714470, KC877673
    2. NR_148042.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC120024, BM714470, KC877673
    3. NR_148043.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC120024, BM714470, KC877673
    4. NR_148044.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC120024, BM714470, KC877673
      Related
      ENST00000520284.5
    5. NR_148045.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC120024, BM714470, KC877673
      Related
      ENST00000517795.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      80415167..80438086
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011524658.3XP_011522960.1  endonuclease V isoform X5

      Conserved Domains (1) summary
      cd06559
      Location:17258
      Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
    2. XM_011524669.3XP_011522971.1  endonuclease V isoform X13

      Conserved Domains (1) summary
      cd06559
      Location:17256
      Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
    3. XM_011524670.2XP_011522972.1  endonuclease V isoform X16

      Conserved Domains (1) summary
      cd06559
      Location:17249
      Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
    4. XM_011524671.3XP_011522973.1  endonuclease V isoform X19

      Conserved Domains (1) summary
      cd06559
      Location:17238
      Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
    5. XM_011524666.2XP_011522968.1  endonuclease V isoform X12

      See identical proteins and their annotated locations for XP_011522968.1

      Conserved Domains (1) summary
      cd06559
      Location:1175
      Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
    6. XM_047435817.1XP_047291773.1  endonuclease V isoform X21

    7. XM_047435811.1XP_047291767.1  endonuclease V isoform X12

    8. XM_047435812.1XP_047291768.1  endonuclease V isoform X12

    9. XM_017024508.2XP_016879997.1  endonuclease V isoform X12

      Conserved Domains (1) summary
      cd06559
      Location:1175
      Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
    10. XM_047435813.1XP_047291769.1  endonuclease V isoform X12

    11. XM_017024513.2XP_016880002.1  endonuclease V isoform X21

      UniProtKB/TrEMBL
      H0YBZ5
      Related
      ENSP00000430639.1, ENST00000519331.1
      Conserved Domains (1) summary
      cl00653
      Location:153
      Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
    12. XM_011524667.3XP_011522969.1  endonuclease V isoform X12

      See identical proteins and their annotated locations for XP_011522969.1

      Conserved Domains (1) summary
      cd06559
      Location:1175
      Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
    13. XM_011524655.2XP_011522957.1  endonuclease V isoform X1

      Conserved Domains (1) summary
      cd06559
      Location:17258
      Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
    14. XM_011524662.2XP_011522964.1  endonuclease V isoform X9

      Conserved Domains (1) summary
      cd06559
      Location:17256
      Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
    15. XM_011524657.2XP_011522959.1  endonuclease V isoform X3

      Conserved Domains (1) summary
      cd06559
      Location:17247
      Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
    16. XM_006721837.4XP_006721900.1  endonuclease V isoform X11

      Conserved Domains (1) summary
      cd06559
      Location:17245
      Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
    17. XM_011524660.1XP_011522962.1  endonuclease V isoform X7

      Conserved Domains (1) summary
      cd06559
      Location:17213
      Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
    18. XM_011524661.3XP_011522963.1  endonuclease V isoform X8

      Conserved Domains (1) summary
      cd06559
      Location:17202
      Endonuclease_V; a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
    19. XM_005257246.4XP_005257303.1  endonuclease V isoform X17

      Conserved Domains (1) summary
      cd06559
      Location:17200
      Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
    20. XM_011524656.2XP_011522958.1  endonuclease V isoform X2

      Conserved Domains (1) summary
      cd06559
      Location:17258
      Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
    21. XM_011524663.2XP_011522965.1  endonuclease V isoform X10

      Conserved Domains (1) summary
      cd06559
      Location:17256
      Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases
    22. XM_047435809.1XP_047291765.1  endonuclease V isoform X4

    23. XM_047435816.1XP_047291772.1  endonuclease V isoform X18

    24. XM_017024510.2XP_016879999.1  endonuclease V isoform X20

    25. XM_047435815.1XP_047291771.1  endonuclease V isoform X15

    26. XM_047435810.1XP_047291766.1  endonuclease V isoform X6

    27. XM_047435814.1XP_047291770.1  endonuclease V isoform X14

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      81317021..81339980
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054315824.1XP_054171799.1  endonuclease V isoform X23

    2. XM_054315807.1XP_054171782.1  endonuclease V isoform X5

    3. XM_054315820.1XP_054171795.1  endonuclease V isoform X13

    4. XM_054315823.1XP_054171798.1  endonuclease V isoform X22

    5. XM_054315828.1XP_054171803.1  endonuclease V isoform X24

    6. XM_054315817.1XP_054171792.1  endonuclease V isoform X12

    7. XM_054315829.1XP_054171804.1  endonuclease V isoform X21

    8. XM_054315814.1XP_054171789.1  endonuclease V isoform X12

    9. XM_054315816.1XP_054171791.1  endonuclease V isoform X12

    10. XM_054315815.1XP_054171790.1  endonuclease V isoform X12

    11. XM_054315819.1XP_054171794.1  endonuclease V isoform X12

    12. XM_054315830.1XP_054171805.1  endonuclease V isoform X21

    13. XM_054315818.1XP_054171793.1  endonuclease V isoform X12

    14. XM_054315803.1XP_054171778.1  endonuclease V isoform X1

    15. XM_054315811.1XP_054171786.1  endonuclease V isoform X9

    16. XM_054315805.1XP_054171780.1  endonuclease V isoform X3

    17. XM_054315813.1XP_054171788.1  endonuclease V isoform X11

    18. XM_054315809.1XP_054171784.1  endonuclease V isoform X7

    19. XM_054315810.1XP_054171785.1  endonuclease V isoform X8

    20. XM_054315825.1XP_054171800.1  endonuclease V isoform X17

    21. XM_054315804.1XP_054171779.1  endonuclease V isoform X2

    22. XM_054315812.1XP_054171787.1  endonuclease V isoform X10

    23. XM_054315806.1XP_054171781.1  endonuclease V isoform X4

    24. XM_054315826.1XP_054171801.1  endonuclease V isoform X18

    25. XM_054315827.1XP_054171802.1  endonuclease V isoform X20

    26. XM_054315822.1XP_054171797.1  endonuclease V isoform X15

    27. XM_054315808.1XP_054171783.1  endonuclease V isoform X6

    28. XM_054315821.1XP_054171796.1  endonuclease V isoform X14

    RNA

    1. XR_008484812.1 RNA Sequence