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    tsp-2 TetraSPanin family [ Caenorhabditis elegans ]

    Gene ID: 259752, updated on 2-Nov-2024

    Summary

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    Official Symbol
    tsp-2
    Official Full Name
    TetraSPanin family
    Primary source
    WormBase:WBGene00006628
    Locus tag
    CELE_C02F5.11
    See related
    AllianceGenome:WB:WBGene00006628
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See tsp-2 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    4
    Sequence:
    Chromosome: III; NC_003281.10 (8236928..8237935, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Small RNA 2'-O-methyltransferase Neighboring gene MBL fold metallo-hydrolase Neighboring gene Uncharacterized protein Neighboring gene Tetraspanin-1 Neighboring gene Putative zinc finger protein C02F5.12

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dehydration-induced tps gene transcripts from an anhydrobiotic nematode contain novel spliced leaders and encode atypical GT-20 family proteins. Goyal K, et al. Biochimie, 2005 Jun. PMID 15935281
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    TetraSPanin family
    NP_498803.1
    • Product from WormBase gene class tsp;
      Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      8236928..8237935 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_066402.2 → NP_498803.1  TetraSPanin family [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_498803.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q95QY8
      Conserved Domains (1) summary
      pfam00335
      Location:84 → 203
      Tetraspannin; Tetraspanin family
    Nucleotide Protein
    Heading Accession and Version

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