U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    cas4 CRISPR-associated protein Cas4 [ Pyrococcus furiosus DSM 3638 ]

    Gene ID: 1468988, updated on 22-Oct-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    cas4
    Gene description
    CRISPR-associated protein Cas4
    Locus tag
    PF_RS05620
    Gene type
    protein coding
    Organism
    Pyrococcus furiosus DSM 3638 (strain: DSM 3638, type-material: type strain of Pyrococcus furiosus)
    Lineage
    Archaea; Methanobacteriati; Methanobacteriota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus
    Old locus tag
    PF1119
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_003413.1 (1067252..1067761, complement)

    NC_003413.1Genomic Context describing neighboring genes Neighboring gene RNA-binding protein Neighboring gene adenylyltransferase/cytidyltransferase family protein Neighboring gene CRISPR-associated endonuclease Cas2 Neighboring gene type I-B CRISPR-associated endonuclease Cas1b Neighboring gene CRISPR-associated helicase/endonuclease Cas3 Neighboring gene type I-B CRISPR-associated protein Cas5b Neighboring gene type I-B CRISPR-associated protein Cas7/Cst2/DevR Neighboring gene type I-B CRISPR-associated protein Cas8b1/Cst1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003413.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis. Makarova KS, et al. Nucleic Acids Res, 2002 Jan 15. PMID 11788711, Free PMC Article
    2. Identification of genes that are associated with DNA repeats in prokaryotes. Jansen R, et al. Mol Microbiol, 2002 Mar. PMID 11952905
    3. Genomic sequence of hyperthermophile, Pyrococcus furiosus: implications for physiology and enzymology. Robb FT, et al. Methods Enzymol, 2001. PMID 11210495
    4. Evidence of recent lateral gene transfer among hyperthermophilic archaea. Diruggiero J, et al. Mol Microbiol, 2000 Nov. PMID 11115105
    5. Divergence of the hyperthermophilic archaea Pyrococcus furiosus and P. horikoshii inferred from complete genomic sequences. Maeder DL, et al. Genetics, 1999 Aug. PMID 10430560, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General protein information

    Go to the top of the page Help
    Preferred Names
    CRISPR-associated protein Cas4
    WP_011012259.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003413.1 Reference assembly

      Range
      1067252..1067761 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_011012259.1 MULTISPECIES: CRISPR-associated protein Cas4 [Pyrococcus]

      See identical proteins and their annotated locations for WP_011012259.1

      UniProtKB/TrEMBL
      A0A5C0XSF1, I6UZ06, Q8U1T6
      Conserved Domains (1) summary
      pfam01930
      Location:12 → 169
      Cas_Cas4; Domain of unknown function DUF83
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.