LOC100279918 putative RNA-binding protein ARP1 [Zea mays] - Gene

Summary

Gene symbol: LOC100279918
Gene description: putative RNA-binding protein ARP1
Locus tag: ZEAMMB73_Zm00001d018103
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Zea mays
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as: GRMZM2G303915
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Genomic context

Location:: chromosome: 5

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
103	current	Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1)	5	NC_050100.1 (216894570..216900797)
102.20200423	previous assembly	B73 RefGen_v4 (GCF_000005005.2)	5	NC_024463.2 (214348274..214354390)

Chromosome 5 - NC_050100.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: uncharacterized protein LOC100279918

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001364466.1 → NP_001351395.1 uncharacterized protein LOC100279918

Status: VALIDATED

Source sequence(s)

BT055120, DR818136, EU971341

UniProtKB/TrEMBL

A0A1D6HKR9, B8A0M8

Conserved Domains (2) summary

cd12384
Location:47 → 122

RRM_RBM24_RBM38_like; RNA recognition motif in eukaryotic RNA-binding protein RBM24, RBM38 and similar proteins

cl25887
Location:60 → 300

RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

NC_050100.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Range

216894570..216900797

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_035967953.1 → XP_035823846.1 uncharacterized protein LOC100279918 isoform X1

UniProtKB/TrEMBL

A0A804PND6, B8A0M8

Conserved Domains (2) summary

TIGR01628
Location:60 → 301

PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family

cl17169
Location:47 → 122

RRM_SF; RNA recognition motif (RRM) superfamily

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

NM_001152869.1: Suppressed sequence

Description

NM_001152869.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.