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    LOC4335293 prostaglandin E synthase 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335293, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4335293
    Gene description
    prostaglandin E synthase 2
    Locus tag
    OSNPB_040244400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 29.9), flower buds (RPKM 29.4) and 6 other tissues See more
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    Genomic context

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    See LOC4335293 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (9336764..9345136)

    Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA Z247 Neighboring gene receptor homology region, transmembrane domain- and RING domain-containing protein 6 Neighboring gene putative methyltransferase C9orf114 homolog Neighboring gene putative methyltransferase C9orf114

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables prostaglandin-E synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    prostaglandin E synthase 2
    Names
    Os04g0244400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

      Range
      9336764..9345136
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781573.2 → XP_015637059.1  prostaglandin E synthase 2

      UniProtKB/TrEMBL
      B9FE29, Q7XW88
      Conserved Domains (3) summary
      cd03197
      Location:168 → 313
      GST_C_mPGES2; C-terminal, alpha helical domain of microsomal Prostaglandin E synthase Type 2
      COG0625
      Location:95 → 310
      GstA; Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
      cd03040
      Location:92 → 164
      GST_N_mPGES2; GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal ...
    Nucleotide Protein
    Heading Accession and Version

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