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    LOC9266581 WD repeat-containing protein 26 homolog [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9266581, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC9266581
    Gene description
    WD repeat-containing protein 26 homolog
    Locus tag
    OSNPB_020294600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 19.8), flower buds (RPKM 19.7) and 6 other tissues See more
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    Genomic context

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    See LOC9266581 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (11199407..11205884)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene microfibrillar-associated protein 1 Neighboring gene uncharacterized LOC4329070 Neighboring gene protein PAT1 homolog Neighboring gene uncharacterized LOC112937979

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    WD repeat-containing protein 26 homolog
    Names
    OSJNBa0073G17.1
    Os02g0294600
    putative WD repeat protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      11199407..11205884
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770822.2 → XP_015626308.1  WD repeat-containing protein 26 homolog

      UniProtKB/TrEMBL
      A3A5T2
      Conserved Domains (3) summary
      smart00668
      Location:94 → 145
      CTLH; C-terminal to LisH motif
      cd00200
      Location:263 → 555
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:273 → 313
      7WD40; WD40 repeat [structural motif]

    2. XM_015770820.2 → XP_015626306.1  WD repeat-containing protein 26 homolog

      UniProtKB/TrEMBL
      A3A5T2
      Conserved Domains (3) summary
      smart00668
      Location:94 → 145
      CTLH; C-terminal to LisH motif
      cd00200
      Location:263 → 555
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:273 → 313
      7WD40; WD40 repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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