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    LOC4335304 thiosulfate sulfurtransferase 16, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335304, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4335304
    Gene description
    thiosulfate sulfurtransferase 16, chloroplastic
    Locus tag
    OSNPB_040249600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in milk grains (RPKM 5.7), flower buds (RPKM 3.1) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (9671279..9674655, complement)

    Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene sucrose synthase 7-like Neighboring gene uncharacterized LOC112938685 Neighboring gene uncharacterized LOC107278059

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    thiosulfate sulfurtransferase 16, chloroplastic
    Names
    Os04g0249600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

      Range
      9671279..9674655 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015778422.2 → XP_015633908.1  thiosulfate sulfurtransferase 16, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A0A0N7KIQ3, Q0JEL3
      Conserved Domains (1) summary
      cl00125
      Location:23 → 146
      RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...

    2. XM_015778421.2 → XP_015633907.1  thiosulfate sulfurtransferase 16, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A0A0N7KIQ3, Q0JEL3
      Conserved Domains (1) summary
      cl00125
      Location:23 → 146
      RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...

    3. XM_026025210.1 → XP_025880995.1  thiosulfate sulfurtransferase 16, chloroplastic isoform X2

      UniProtKB/TrEMBL
      A0A0P0W7L6, A0A8J8Y2Q9, B9FE35
      Conserved Domains (1) summary
      cl00125
      Location:23 → 123
      RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...
    Nucleotide Protein
    Heading Accession and Version

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