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    LINC01883 long intergenic non-protein coding RNA 1883 [ Homo sapiens (human) ]

    Gene ID: 100996902, updated on 10-Oct-2023

    Summary

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    Official Symbol
    LINC01883provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1883provided by HGNC
    Primary source
    HGNC:HGNC:52702
    See related
    Ensembl:ENSG00000235009 AllianceGenome:HGNC:52702
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    2p22.1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (38431294..38433573)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (38438182..38440463)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (38658436..38660715)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene atlastin GTPase 2 Neighboring gene MPRA-validated peak3663 silencer Neighboring gene MPRA-validated peak3664 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:38578692-38579192 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:38580665-38581166 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:38581167-38581666 Neighboring gene H3K27ac hESC enhancers GRCh37_chr2:38603507-38604008 and GRCh37_chr2:38604009-38604508 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11372 Neighboring gene MPRA-validated peak3665 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:38624132-38624632 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:38633814-38634453 Neighboring gene uncharacterized LOC105374468 Neighboring gene Sharpr-MPRA regulatory region 2666 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15606 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15607 Neighboring gene long intergenic non-protein coding RNA 2613 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:38703635-38704136 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11373 Neighboring gene ribosomal protein lateral stalk subunit P0 pseudogene 6 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11374 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15608 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:38763105-38763715 Neighboring gene Sharpr-MPRA regulatory region 10245 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:38779519-38779723 Neighboring gene heterogeneous nuclear ribonucleoprotein L like Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11376 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11377

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Clone Names

    • AC093822.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_146454.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AA973088, AW082227
      Related
      ENST00000457385.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      38431294..38433573
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      38438182..38440463
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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