GRASLND glycosaminoglycan regulatory associated long non-coding RNA [Homo sapiens (human)] - Gene

Summary

Official Symbol: GRASLNDprovided by HGNC
Official Full Name: glycosaminoglycan regulatory associated long non-coding RNAprovided by HGNC
Primary source: HGNC:HGNC:30963
See related: Ensembl:ENSG00000228203 AllianceGenome:HGNC:30963
Gene type: ncRNA
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: RNF144A-AS1
Expression: Biased expression in spleen (RPKM 6.3), adrenal (RPKM 3.6) and 3 other tissues See more
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Genomic context

Location:: 2p25.1

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCh38.p14 (GCF_000001405.40)	2	NC_000002.12 (6912276..6918682, complement)
RS_2024_08	current	T2T-CHM13v2.0 (GCF_009914755.1)	2	NC_060926.1 (6933777..6940181, complement)
RS_2024_09	previous assembly	GRCh37.p13 (GCF_000001405.25)	2	NC_000002.11 (7052407..7058813, complement)

Chromosome 2 - NC_000002.12 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

The Role of Long Non-Coding RNF144A-AS1 in Cancer Progression.
Title: The Role of Long Non-Coding RNF144A-AS1 in Cancer Progression.
GRASLND regulates melanoma cell progression by targeting the miR-218-5p/STAM2 axis.
Title: GRASLND regulates melanoma cell progression by targeting the miR-218-5p/STAM2 axis.
RNF144A-AS1 promotes the development of glioma cells by targeting miR-665/HMGA1 axis.
Title: RNF144A-AS1 promotes the development of glioma cells by targeting miR-665/HMGA1 axis.

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Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

D11S2560 (e-PCR)
- UniSTS:37928

D8S2279 (e-PCR)
- UniSTS:473907

G59639 (e-PCR)
- UniSTS:136795

RH79802 (e-PCR)
- UniSTS:88688

D15S1477 (e-PCR)
- UniSTS:474482

Other Names

RNF144A antisense RNA 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.