U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    TEDDM1 transmembrane epididymal protein 1 [ Homo sapiens (human) ]

    Gene ID: 127670, updated on 28-Oct-2024

    Summary

    Official Symbol
    TEDDM1provided by HGNC
    Official Full Name
    transmembrane epididymal protein 1provided by HGNC
    Primary source
    HGNC:HGNC:30233
    See related
    Ensembl:ENSG00000203730 MIM:620288; AllianceGenome:HGNC:30233
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    HE9; EDDM9; Epdd1; TMEM45C; HEL-S-45e
    Summary
    Predicted to be located in membrane. [provided by Alliance of Genome Resources, Oct 2024]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See TEDDM1 in Genome Data Viewer
    Location:
    1q25.3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (182398117..182400667, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (181757690..181760240, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (182367252..182369802, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:182306445-182307080 Neighboring gene CRISPRi-validated cis-regulatory element chr1.10229 Neighboring gene CRISPRi-validated cis-regulatory element chr1.10230 Neighboring gene eukaryotic translation initiation factor 1 pseudogene 3 Neighboring gene Sharpr-MPRA regulatory region 13543 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:182354799-182355998 Neighboring gene glutamate-ammonia ligase Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1618 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:182373283-182373464 Neighboring gene long intergenic non-protein coding RNA 272 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1619 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:182408935-182409515 Neighboring gene transmembrane epididymal protein 2, pseudogene

    Genomic regions, transcripts, and products

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    transmembrane epididymal protein 1
    Names
    epididymal protein 9
    epididymis secretory sperm binding protein Li 45e
    human epididymis-specific protein 9
    putative membrane protein HE9
    transmembrane protein 45C

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_172000.4NP_741997.3  transmembrane epididymal protein 1

      See identical proteins and their annotated locations for NP_741997.3

      Status: VALIDATED

      Source sequence(s)
      AL139344
      Consensus CDS
      CCDS30953.1
      UniProtKB/Swiss-Prot
      Q5T9Z0, Q8IVJ0
      UniProtKB/TrEMBL
      A0A0K0K1L0
      Related
      ENSP00000356536.1, ENST00000367565.2
      Conserved Domains (1) summary
      pfam04819
      Location:100217
      DUF716; Family of unknown function (DUF716)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      182398117..182400667 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      181757690..181760240 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)