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    LINC00269 long intergenic non-protein coding RNA 269 [ Homo sapiens (human) ]

    Gene ID: 100996279, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC00269provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 269provided by HGNC
    Primary source
    HGNC:HGNC:26586
    See related
    Ensembl:ENSG00000215162 AllianceGenome:HGNC:26586
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CXorf62; NCRNA00269
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC00269 in Genome Data Viewer
    Location:
    Xq13.1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (69179557..69209924)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (67612939..67643302)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (68399400..68429767)

    Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:68409565-68410066 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:68410067-68410566 Neighboring gene high mobility group nucleosome binding domain 1 pseudogene 35 Neighboring gene praja ring finger ubiquitin ligase 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:68437057-68437556 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:68442199-68442970 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:68475969-68476469 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:68476955-68477456 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chrX:68482961-68483512 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrX:68483513-68484063 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrX:68484064-68484614 Neighboring gene ReSE screen-validated silencer GRCh37_chrX:68500351-68500533 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:68505841-68506822 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chrX:68509810-68510701 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:68513310-68513810 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:68513811-68514311 Neighboring gene NANOG hESC enhancer GRCh37_chrX:68525339-68525849 Neighboring gene NANOG hESC enhancer GRCh37_chrX:68597698-68598220 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20887 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:68668613-68669113 Neighboring gene ReSE screen-validated silencer GRCh37_chrX:68725122-68725295 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:68726227-68726726 Neighboring gene CYCS pseudogene 43 Neighboring gene NALCN channel auxiliary factor 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_103715.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL157699, AL353140
      Related
      ENST00000399711.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

      Range
      69179557..69209924
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060947.1 Alternate T2T-CHM13v2.0

      Range
      67612939..67643302
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)