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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_031968.2Â RefSeqGene
- Range
-
15534..49856
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001254740.2 → NP_001241669.1  sodium/potassium/calcium exchanger 1 isoform 2
See identical proteins and their annotated locations for NP_001241669.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (2) is shorter and has a distinct N-terminus, compared to isoform 1.
- Source sequence(s)
-
AC011939, AC027220, AK300633
- UniProtKB/TrEMBL
-
B4DUG1
- Conserved Domains (1) summary
-
- pfam01699
Location:263 → 414
- Na_Ca_ex; Sodium/calcium exchanger protein
-
NM_001301031.1 → NP_001287960.1  sodium/potassium/calcium exchanger 1 isoform 3
See identical proteins and their annotated locations for NP_001287960.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR, and lacks an alternate in-frame exon in the 3' coding region, compared to variant 1, resulting in an isoform (3) that is shorter than isoform 1.
- Source sequence(s)
-
AI026072, AK304006, BC117263, BM129630, BM681488, EL947516, EL948740
- Consensus CDS
-
CCDS73742.1
- UniProtKB/TrEMBL
-
B4E1W0
- Related
- ENSP00000381991.4, ENST00000399033.8
- Conserved Domains (2) summary
-
- TIGR00927
Location:1 → 1069
- 2A1904; K+-dependent Na+/Ca+ exchanger
- pfam01699
Location:458 → 602
- Na_Ca_ex; Sodium/calcium exchanger protein
-
NM_001301032.1 → NP_001287961.1  sodium/potassium/calcium exchanger 1 isoform 4
See identical proteins and their annotated locations for NP_001287961.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR, and lacks an alternate in-frame exon in the central coding region, compared to variant 1, resulting in an isoform (4) that is shorter than isoform 1.
- Source sequence(s)
-
AB014602, AF026132, AI026072, BM129630, BM681488, EL947516, EL948740
- Consensus CDS
-
CCDS73743.1
- UniProtKB/TrEMBL
-
B4E1W0
- Related
- ENSP00000439190.1, ENST00000546330.1
- Conserved Domains (2) summary
-
- TIGR00927
Location:1 → 1081
- 2A1904; K+-dependent Na+/Ca+ exchanger
- pfam01699
Location:458 → 602
- Na_Ca_ex; Sodium/calcium exchanger protein
-
NM_001301033.2 → NP_001287962.1  sodium/potassium/calcium exchanger 1 isoform 5
See identical proteins and their annotated locations for NP_001287962.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR, lacks an alternate in-frame exon in the central coding region, and contains alternate 3' exon structure and thus differs in the 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (5) has a distinct C-terminus and is shorter than isoform 1.
- Source sequence(s)
-
AB014602, AC011939, AC027220, AK304006
- Consensus CDS
-
CCDS73744.1
- UniProtKB/TrEMBL
- B4E1W0, F5H127
- Related
- ENSP00000439693.1, ENST00000537259.5
- Conserved Domains (1) summary
-
- cl27511
Location:1 → 1000
- Na_Ca_ex; Sodium/calcium exchanger protein
-
NM_001411142.1 → NP_001398071.1  sodium/potassium/calcium exchanger 1 isoform 6
Status: REVIEWED
- Source sequence(s)
-
AC011939, AC027220
- Consensus CDS
-
CCDS92023.1
- UniProtKB/TrEMBL
-
F5H483
- Related
- ENSP00000445163.1, ENST00000544319.6
-
NM_004727.3 → NP_004718.1  sodium/potassium/calcium exchanger 1 isoform 1
See identical proteins and their annotated locations for NP_004718.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
AC011939, AC027220, AF062922
- Consensus CDS
-
CCDS45284.1
- UniProtKB/Swiss-Prot
- O43485, O60721, O75184, Q17RM9
- UniProtKB/TrEMBL
-
B4E1W0
- Related
- ENSP00000261892.6, ENST00000261892.11
- Conserved Domains (1) summary
-
- TIGR00927
Location:1 → 1099
- 2A1904; K+-dependent Na+/Ca+ exchanger
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000015.10Â Reference GRCh38.p14 Primary Assembly
- Range
-
65611350..65661002
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_024450103.2 → XP_024305871.1  sodium/potassium/calcium exchanger 1 isoform X1
- UniProtKB/Swiss-Prot
- O43485, O60721, O75184, Q17RM9
- UniProtKB/TrEMBL
-
B4E1W0
- Conserved Domains (1) summary
-
- TIGR00927
Location:1 → 1099
- 2A1904; K+-dependent Na+/Ca+ exchanger
-
XM_011522219.2 → XP_011520521.1  sodium/potassium/calcium exchanger 1 isoform X1
See identical proteins and their annotated locations for XP_011520521.1
- UniProtKB/Swiss-Prot
- O43485, O60721, O75184, Q17RM9
- UniProtKB/TrEMBL
-
B4E1W0
- Conserved Domains (1) summary
-
- TIGR00927
Location:1 → 1099
- 2A1904; K+-dependent Na+/Ca+ exchanger
-
XM_024450105.2 → XP_024305873.1  sodium/potassium/calcium exchanger 1 isoform X1
- UniProtKB/Swiss-Prot
- O43485, O60721, O75184, Q17RM9
- UniProtKB/TrEMBL
-
B4E1W0
- Conserved Domains (1) summary
-
- TIGR00927
Location:1 → 1099
- 2A1904; K+-dependent Na+/Ca+ exchanger
-
XM_047433325.1 → XP_047289281.1  sodium/potassium/calcium exchanger 1 isoform X2
-
XM_024450104.2 → XP_024305872.1  sodium/potassium/calcium exchanger 1 isoform X1
- UniProtKB/Swiss-Prot
- O43485, O60721, O75184, Q17RM9
- UniProtKB/TrEMBL
-
B4E1W0
- Conserved Domains (1) summary
-
- TIGR00927
Location:1 → 1099
- 2A1904; K+-dependent Na+/Ca+ exchanger
-
XM_047433326.1 → XP_047289282.1  sodium/potassium/calcium exchanger 1 isoform X2
-
XM_047433330.1 → XP_047289286.1  sodium/potassium/calcium exchanger 1 isoform X7
-
XM_011522222.4 → XP_011520524.1  sodium/potassium/calcium exchanger 1 isoform X7
See identical proteins and their annotated locations for XP_011520524.1
- UniProtKB/TrEMBL
-
B4E1W0
- Conserved Domains (2) summary
-
- TIGR00927
Location:1 → 1018
- 2A1904; K+-dependent Na+/Ca+ exchanger
- pfam01699
Location:458 → 602
- Na_Ca_ex; Sodium/calcium exchanger protein
-
XM_047433333.1 → XP_047289289.1  sodium/potassium/calcium exchanger 1 isoform X10
-
XM_047433334.1 → XP_047289290.1  sodium/potassium/calcium exchanger 1 isoform X11
-
XM_047433338.1 → XP_047289294.1  sodium/potassium/calcium exchanger 1 isoform X15
-
XM_011522221.4 → XP_011520523.1  sodium/potassium/calcium exchanger 1 isoform X3
See identical proteins and their annotated locations for XP_011520523.1
- UniProtKB/TrEMBL
-
B4E1W0
- Conserved Domains (2) summary
-
- TIGR00927
Location:1 → 1069
- 2A1904; K+-dependent Na+/Ca+ exchanger
- pfam01699
Location:458 → 602
- Na_Ca_ex; Sodium/calcium exchanger protein
-
XM_047433327.1 → XP_047289283.1  sodium/potassium/calcium exchanger 1 isoform X4
-
XM_047433335.1 → XP_047289291.1  sodium/potassium/calcium exchanger 1 isoform X13
-
XM_017022724.3 → XP_016878213.1  sodium/potassium/calcium exchanger 1 isoform X5
- UniProtKB/TrEMBL
-
B4E1W0
-
XM_047433331.1 → XP_047289287.1  sodium/potassium/calcium exchanger 1 isoform X8
-
XM_017022725.3 → XP_016878214.1  sodium/potassium/calcium exchanger 1 isoform X12
- UniProtKB/TrEMBL
-
B4E1W0
-
XM_047433328.1 → XP_047289284.1  sodium/potassium/calcium exchanger 1 isoform X6
-
XM_047433332.1 → XP_047289288.1  sodium/potassium/calcium exchanger 1 isoform X9
-
XM_047433336.1 → XP_047289292.1  sodium/potassium/calcium exchanger 1 isoform X14
-
XM_005254781.5 → XP_005254838.1  sodium/potassium/calcium exchanger 1 isoform X16
- Conserved Domains (2) summary
-
- TIGR00927
Location:1 → 637
- 2A1904; K+-dependent Na+/Ca+ exchanger
- pfam01699
Location:458 → 602
- Na_Ca_ex; Sodium/calcium exchanger protein
-
XM_011522226.4 → XP_011520528.1  sodium/potassium/calcium exchanger 1 isoform X17
- Conserved Domains (2) summary
-
- TIGR00927
Location:1 → 637
- 2A1904; K+-dependent Na+/Ca+ exchanger
- pfam01699
Location:458 → 602
- Na_Ca_ex; Sodium/calcium exchanger protein
-
XM_047433339.1 → XP_047289295.1  sodium/potassium/calcium exchanger 1 isoform X18
RNA
-
XR_007064494.1 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060939.1Â Alternate T2T-CHM13v2.0
- Range
-
63420643..63470640
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054379191.1 → XP_054235166.1  sodium/potassium/calcium exchanger 1 isoform X1
- UniProtKB/Swiss-Prot
- O43485, O60721, O75184, Q17RM9
-
XM_054379190.1 → XP_054235165.1  sodium/potassium/calcium exchanger 1 isoform X1
- UniProtKB/Swiss-Prot
- O43485, O60721, O75184, Q17RM9
-
XM_054379193.1 → XP_054235168.1  sodium/potassium/calcium exchanger 1 isoform X1
- UniProtKB/Swiss-Prot
- O43485, O60721, O75184, Q17RM9
-
XM_054379192.1 → XP_054235167.1  sodium/potassium/calcium exchanger 1 isoform X1
- UniProtKB/Swiss-Prot
- O43485, O60721, O75184, Q17RM9
-
XM_054379194.1 → XP_054235169.1  sodium/potassium/calcium exchanger 1 isoform X2
-
XM_054379195.1 → XP_054235170.1  sodium/potassium/calcium exchanger 1 isoform X2
-
XM_054379200.1 → XP_054235175.1  sodium/potassium/calcium exchanger 1 isoform X7
-
XM_054379201.1 → XP_054235176.1  sodium/potassium/calcium exchanger 1 isoform X7
-
XM_054379204.1 → XP_054235179.1  sodium/potassium/calcium exchanger 1 isoform X10
-
XM_054379205.1 → XP_054235180.1  sodium/potassium/calcium exchanger 1 isoform X11
-
XM_054379209.1 → XP_054235184.1  sodium/potassium/calcium exchanger 1 isoform X15
-
XM_054379198.1 → XP_054235173.1  sodium/potassium/calcium exchanger 1 isoform X5
-
XM_054379196.1 → XP_054235171.1  sodium/potassium/calcium exchanger 1 isoform X3
-
XM_054379202.1 → XP_054235177.1  sodium/potassium/calcium exchanger 1 isoform X8
-
XM_054379206.1 → XP_054235181.1  sodium/potassium/calcium exchanger 1 isoform X12
-
XM_054379199.1 → XP_054235174.1  sodium/potassium/calcium exchanger 1 isoform X6
-
XM_054379197.1 → XP_054235172.1  sodium/potassium/calcium exchanger 1 isoform X4
-
XM_054379203.1 → XP_054235178.1  sodium/potassium/calcium exchanger 1 isoform X9
-
XM_054379208.1 → XP_054235183.1  sodium/potassium/calcium exchanger 1 isoform X14
-
XM_054379207.1 → XP_054235182.1  sodium/potassium/calcium exchanger 1 isoform X13
-
XM_054379210.1 → XP_054235185.1  sodium/potassium/calcium exchanger 1 isoform X16
-
XM_054379211.1 → XP_054235186.1  sodium/potassium/calcium exchanger 1 isoform X17
-
XM_054379212.1 → XP_054235187.1  sodium/potassium/calcium exchanger 1 isoform X18
RNA
-
XR_008489031.1 RNA Sequence