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    PPP3CA-DT PPP3CA divergent transcript [ Homo sapiens (human) ]

    Gene ID: 90024, updated on 22-Oct-2024

    Summary

    Official Symbol
    PPP3CA-DTprovided by HGNC
    Official Full Name
    PPP3CA divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:58118
    See related
    Ensembl:ENSG00000254531
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in prostate (RPKM 14.8), fat (RPKM 5.8) and 24 other tissues See more
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    Genomic context

    See PPP3CA-DT in Genome Data Viewer
    Location:
    4q24
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (101347777..101348883)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (104662468..104663574)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (102268934..102270040)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene protein phosphatase 3 catalytic subunit alpha Neighboring gene Sharpr-MPRA regulatory region 14793 Neighboring gene microRNA 8066 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:102225920-102226503 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15591 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15592 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15593 Neighboring gene microRNA 1255a Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21749 Neighboring gene uncharacterized LOC124900741 Neighboring gene uncharacterized LOC107986297 Neighboring gene RNA, U6 small nuclear 462, pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033874.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK000028, AP001816
      Related
      ENST00000750060.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      101347777..101348883
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      104662468..104663574
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)