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    LOC283387 uncharacterized LOC283387 [ Homo sapiens (human) ]

    Gene ID: 283387, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC283387
    Gene description
    uncharacterized LOC283387
    See related
    Ensembl:ENSG00000245651
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC283387 in Genome Data Viewer
    Location:
    12q14.1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (57869835..57896482, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (57838202..57864848, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (58263618..58290265, complement)

    Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene CTD small phosphatase 2 Neighboring gene microRNA 26a-2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6560 Neighboring gene uncharacterized LOC105369783 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6561 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:58231763-58232383 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4594 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4595 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4596 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4597 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4598 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4599 Neighboring gene uncharacterized LOC124902948 Neighboring gene Sharpr-MPRA regulatory region 12928 Neighboring gene Sharpr-MPRA regulatory region 14680 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:58286906-58287406 Neighboring gene uncharacterized LOC101927608 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6564 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6565 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6566 Neighboring gene Sharpr-MPRA regulatory region 14765 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:58329372-58329872 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:58329873-58330373 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:58335219-58336028 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_29909 Neighboring gene GIHCG inhibitor of miR-200b/200a/429 expression Neighboring gene ATP23 metallopeptidase and ATP synthase assembly factor homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_148947.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC032840
      Related
      ENST00000499481.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

      Range
      57869835..57896482 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060936.1 Alternate T2T-CHM13v2.0

      Range
      57838202..57864848 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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